Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
Diffstat
-rw-r--r--sci-chemistry/aria/ChangeLog6
-rw-r--r--sci-chemistry/aria/aria-2.3.1.ebuild88
-rw-r--r--sci-chemistry/aria/aria-2.3.2-r1.ebuild92
-rw-r--r--sci-chemistry/aria/aria-2.3.2-r2.ebuild94
-rw-r--r--sci-chemistry/aria/aria-2.3.2.ebuild88
5 files changed, 5 insertions, 363 deletions
diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog
index 226db2c1a04d..b3d1384ff746 100644
--- a/sci-chemistry/aria/ChangeLog
+++ b/sci-chemistry/aria/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-chemistry/aria
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.14 2012/07/10 06:58:29 jdhore Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.15 2012/07/10 07:14:24 jlec Exp $
+
+ 10 Jul 2012; Justin Lecher <jlec@gentoo.org> -aria-2.3.1.ebuild,
+ -aria-2.3.2.ebuild, -aria-2.3.2-r1.ebuild, -aria-2.3.2-r2.ebuild:
+ Drop old
10 Jul 2012; Jeff Horelick <jdhore@gentoo.org> aria-2.3.2-r3.ebuild:
marked x86 per bug 419885
diff --git a/sci-chemistry/aria/aria-2.3.1.ebuild b/sci-chemistry/aria/aria-2.3.1.ebuild
deleted file mode 100644
index f7f9b9af39dc..000000000000
--- a/sci-chemistry/aria/aria-2.3.1.ebuild
+++ /dev/null
@@ -1,88 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.5 2011/08/29 15:28:43 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-PYTHON_USE_WITH="tk"
-
-inherit base eutils python versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.1.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
- sci-chemistry/clashlist
- sci-chemistry/procheck
- sci-libs/clashscore-db
- dev-python/numpy
- dev-python/matplotlib[tk]
- >=sci-chemistry/cns-1.2.1-r3[aria,openmp]
- >=dev-lang/tk-8.3
- >=sci-chemistry/ccpn-2.0.5
- >=dev-tcltk/tix-8.1.4"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
- einfo "Go to ${HOMEPAGE}, download ${A}"
- einfo "and place it in ${DISTDIR}"
-}
-
-src_test(){
- export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
- export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
- $(PYTHON) check.py || die
-}
-
-src_install(){
- insinto "$(python_get_sitedir)/${PN}"
- doins -r src aria2.py || die "failed to install ${PN}"
- insinto "$(python_get_sitedir)/${PN}"/cns
- doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
-
- if use examples; then
- insinto /usr/share/${P}/
- doins -r examples || die
- fi
-
- # ENV
- cat >> "${T}"/20aria <<- EOF
- ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
- EOF
-
- doenvd "${T}"/20aria
-
- # Launch Wrapper
- cat >> "${T}"/aria <<- EOF
- #!/bin/sh
- export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
- export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
- exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
- EOF
-
- dobin "${T}"/aria || die "failed to install wrapper"
- dosym aria /usr/bin/aria2
-
- dodoc README || die
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/aria/aria-2.3.2-r1.ebuild b/sci-chemistry/aria/aria-2.3.2-r1.ebuild
deleted file mode 100644
index fc25192f54b6..000000000000
--- a/sci-chemistry/aria/aria-2.3.2-r1.ebuild
+++ /dev/null
@@ -1,92 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r1.ebuild,v 1.1 2011/10/07 19:23:04 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-PYTHON_USE_WITH="tk"
-
-inherit base eutils python versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
- sci-chemistry/clashlist
- sci-chemistry/procheck
- sci-libs/clashscore-db
- dev-python/numpy
- dev-python/matplotlib[tk]
- >=sci-chemistry/cns-1.2.1-r7[aria,openmp]
- >=dev-lang/tk-8.3
- >=sci-chemistry/ccpn-2.0.5
- >=dev-tcltk/tix-8.1.4"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
- einfo "Go to ${HOMEPAGE}, download ${A}"
- einfo "and place it in ${DISTDIR}"
-}
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-through-space.patch
-}
-
-src_test(){
- export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
- export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
- $(PYTHON) check.py || die
-}
-
-src_install(){
- insinto "$(python_get_sitedir)/${PN}"
- doins -r src aria2.py || die "failed to install ${PN}"
- insinto "$(python_get_sitedir)/${PN}"/cns
- doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
-
- if use examples; then
- insinto /usr/share/${P}/
- doins -r examples || die
- fi
-
- # ENV
- cat >> "${T}"/20aria <<- EOF
- ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
- EOF
-
- doenvd "${T}"/20aria
-
- # Launch Wrapper
- cat >> "${T}"/aria <<- EOF
- #!/bin/sh
- export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
- export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
- exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
- EOF
-
- dobin "${T}"/aria || die "failed to install wrapper"
- dosym aria /usr/bin/aria2
-
- dodoc README || die
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/aria/aria-2.3.2-r2.ebuild b/sci-chemistry/aria/aria-2.3.2-r2.ebuild
deleted file mode 100644
index a24da015ef34..000000000000
--- a/sci-chemistry/aria/aria-2.3.2-r2.ebuild
+++ /dev/null
@@ -1,94 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r2.ebuild,v 1.1 2011/10/11 14:24:22 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-PYTHON_USE_WITH="tk"
-
-inherit base eutils python versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
- sci-chemistry/clashlist
- sci-chemistry/procheck
- sci-libs/clashscore-db
- dev-python/numpy
- dev-python/matplotlib[tk]
- >=sci-chemistry/cns-1.2.1-r7[aria,openmp]
- >=dev-lang/tk-8.3
- >=sci-chemistry/ccpn-2.0.5
- >=dev-tcltk/tix-8.1.4"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
- einfo "Go to ${HOMEPAGE}, download ${A}"
- einfo "and place it in ${DISTDIR}"
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${P}-python.patch \
- "${FILESDIR}"/${P}-through-space.patch
-}
-
-src_test(){
- export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
- export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
- $(PYTHON) check.py || die
-}
-
-src_install(){
- insinto "$(python_get_sitedir)/${PN}"
- doins -r src aria2.py || die "failed to install ${PN}"
- insinto "$(python_get_sitedir)/${PN}"/cns
- doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
-
- if use examples; then
- insinto /usr/share/${P}/
- doins -r examples || die
- fi
-
- # ENV
- cat >> "${T}"/20aria <<- EOF
- ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
- EOF
-
- doenvd "${T}"/20aria
-
- # Launch Wrapper
- cat >> "${T}"/aria <<- EOF
- #!/bin/sh
- export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
- export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
- exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
- EOF
-
- dobin "${T}"/aria || die "failed to install wrapper"
- dosym aria /usr/bin/aria2
-
- dodoc README || die
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/aria/aria-2.3.2.ebuild b/sci-chemistry/aria/aria-2.3.2.ebuild
deleted file mode 100644
index 70512b7393a1..000000000000
--- a/sci-chemistry/aria/aria-2.3.2.ebuild
+++ /dev/null
@@ -1,88 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2.ebuild,v 1.2 2011/08/30 13:51:56 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-PYTHON_USE_WITH="tk"
-
-inherit base eutils python versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
- sci-chemistry/clashlist
- sci-chemistry/procheck
- sci-libs/clashscore-db
- dev-python/numpy
- dev-python/matplotlib[tk]
- >=sci-chemistry/cns-1.2.1-r7[aria,openmp]
- >=dev-lang/tk-8.3
- >=sci-chemistry/ccpn-2.0.5
- >=dev-tcltk/tix-8.1.4"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
- einfo "Go to ${HOMEPAGE}, download ${A}"
- einfo "and place it in ${DISTDIR}"
-}
-
-src_test(){
- export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
- export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
- $(PYTHON) check.py || die
-}
-
-src_install(){
- insinto "$(python_get_sitedir)/${PN}"
- doins -r src aria2.py || die "failed to install ${PN}"
- insinto "$(python_get_sitedir)/${PN}"/cns
- doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
-
- if use examples; then
- insinto /usr/share/${P}/
- doins -r examples || die
- fi
-
- # ENV
- cat >> "${T}"/20aria <<- EOF
- ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
- EOF
-
- doenvd "${T}"/20aria
-
- # Launch Wrapper
- cat >> "${T}"/aria <<- EOF
- #!/bin/sh
- export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
- export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
- exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
- EOF
-
- dobin "${T}"/aria || die "failed to install wrapper"
- dosym aria /usr/bin/aria2
-
- dodoc README || die
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}