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| author |   Olivier Fisette <ribosome@gentoo.org> | 2007-05-17 18:47:30 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2007-05-17 18:47:30 +0000 |
| commit | 095fa4cbb8972c5b9d13fd6097e332d265dd9098 (patch) | |
| tree | e0d988e4fc7bb89fa8f3f9017c62b27d3150c39e /sci-biology/biopython/files | |
| parent | removed old versions. (diff) | |
| download | historical-095fa4cbb8972c5b9d13fd6097e332d265dd9098.tar.gz historical-095fa4cbb8972c5b9d13fd6097e332d265dd9098.tar.bz2 historical-095fa4cbb8972c5b9d13fd6097e332d265dd9098.zip | |
New upstream version. Ebuild clean-up. Pruned old version.
Package-Manager: portage-2.1.2.2
Diffstat (limited to 'sci-biology/biopython/files')
| -rw-r--r-- | sci-biology/biopython/files/biopython-1.43-buildkdtree.patch | 28 | ||||
| -rw-r--r-- | sci-biology/biopython/files/digest-biopython-1.40b | 3 | ||||
| -rw-r--r-- | sci-biology/biopython/files/digest-biopython-1.43 | 3 |
3 files changed, 31 insertions, 3 deletions
diff --git a/sci-biology/biopython/files/biopython-1.43-buildkdtree.patch b/sci-biology/biopython/files/biopython-1.43-buildkdtree.patch new file mode 100644 index 000000000000..cefb16d7d95d --- /dev/null +++ b/sci-biology/biopython/files/biopython-1.43-buildkdtree.patch @@ -0,0 +1,28 @@ +--- setup.py.old 2007-03-17 15:21:04.000000000 -0400 ++++ setup.py 2007-05-17 14:02:42.000000000 -0400 +@@ -64,6 +64,7 @@ + _CHECKED = check_dependencies() + return _CHECKED + ++USE_KDTREE = False + def check_dependencies(): + """Return whether the installation should continue.""" + # There should be some way for the user to tell specify not to +@@ -112,15 +113,8 @@ + + + # Compile KDTree ? Not compiled by default +- print "\n*** Bio.KDTree *** NOT built by default " +- kdtree_msg = """ +-The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module, +-which in turn, depends on C++ code that does not compile cleanly on +-all platforms. Hence, Bio.KDTree is not built by default. +- +-Would you like to build Bio.KDTree ?""" +- +- if get_yes_or_no (kdtree_msg, 0): ++ global USE_KDTREE ++ if USE_KDTREE: + NUMPY_PACKAGES.append("Bio.KDTree") + NUMPY_EXTENSIONS.append( + CplusplusExtension('Bio.KDTree._CKDTree', diff --git a/sci-biology/biopython/files/digest-biopython-1.40b b/sci-biology/biopython/files/digest-biopython-1.40b deleted file mode 100644 index 33d945e5176b..000000000000 --- a/sci-biology/biopython/files/digest-biopython-1.40b +++ /dev/null @@ -1,3 +0,0 @@ -MD5 2fb60e6c1e93e15153622c10e5fad7ff biopython-1.40b.tar.gz 627264 -RMD160 6e27ecd50084b58320906bf26574fe510068cc44 biopython-1.40b.tar.gz 627264 -SHA256 591a9f04ac533fd0ec5a1ded108bea897f1019d5ac23337c4bcb39e16d6deb18 biopython-1.40b.tar.gz 627264 diff --git a/sci-biology/biopython/files/digest-biopython-1.43 b/sci-biology/biopython/files/digest-biopython-1.43 new file mode 100644 index 000000000000..759c7a1330c3 --- /dev/null +++ b/sci-biology/biopython/files/digest-biopython-1.43 @@ -0,0 +1,3 @@ +MD5 3c275b321bb1db7d8bda764913aaedcd biopython-1.43.tar.gz 3867907 +RMD160 d7d326659032f9587b85b339941ecb306b694403 biopython-1.43.tar.gz 3867907 +SHA256 eb424da9efddbf376c31660786ecb34ff893ea752bf7300f4a06d1b8c6ba175b biopython-1.43.tar.gz 3867907 |