1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
|
{'description': {'en': 'The Gentoo Science Overlay is intended as a place to '
'work\n'
' outside of the main portage tree on experimental '
'ebuilds. Our aim is to\n'
' increase the rate of development of scientific '
'packages for Gentoo, but\n'
' ebuilds in this repository are by their very '
'nature more experimental. If\n'
' you wish to use them you should be willing to help '
'test and report\n'
' bugs. For contribution read '
'https://wiki.gentoo.org/wiki/Project:Science/Contributing\n'
' '},
'feed': ['https://cgit.gentoo.org/proj/sci.git/atom/',
'https://github.com/gentoo-science/sci/commits/master.atom'],
'homepage': 'https://wiki.gentoo.org/wiki/Project:Science',
'name': 'science',
'owner': [{'email': 'sci@gentoo.org', 'name': 'sci', 'type': 'project'}],
'quality': 'experimental',
'source': [{'type': 'git',
'uri': 'https://anongit.gentoo.org/git/proj/sci.git'},
{'type': 'git', 'uri': 'git://anongit.gentoo.org/proj/sci.git'},
{'type': 'git', 'uri': 'git+ssh://git@git.gentoo.org/proj/sci.git'},
{'type': 'git', 'uri': 'https://github.com/gentoo-science/sci.git'},
{'type': 'git', 'uri': 'git://github.com/gentoo-science/sci.git'},
{'type': 'git', 'uri': 'git@github.com:gentoo-science/sci.git'}],
'status': 'official'}
$ pmaint sync science
warning: Pulling without specifying how to reconcile divergent branches is
discouraged. You can squelch this message by running one of the following
commands sometime before your next pull:
git config pull.rebase false # merge (the default strategy)
git config pull.rebase true # rebase
git config pull.ff only # fast-forward only
You can replace "git config" with "git config --global" to set a default
preference for all repositories. You can also pass --rebase, --no-rebase,
or --ff-only on the command line to override the configured default per
invocation.
From https://anongit.gentoo.org/git/proj/sci
f72d427f9..35aeb0bba master -> origin/master
Updating f72d427f9..35aeb0bba
Fast-forward
profiles/package.mask | 12 -----
sci-biology/ICC/ICC-2.0.1.ebuild | 54 --------------------
sci-biology/ICC/Manifest | 1 -
sci-biology/ICC/metadata.xml | 12 -----
sci-biology/IMAGE/IMAGE-2.4.1.ebuild | 16 ++++--
.../{KING-20161017.ebuild => KING-2.2.5.ebuild} | 21 +++-----
sci-biology/KING/Manifest | 6 +--
.../genomeview-bin/genomeview-bin-2450.ebuild | 22 ++++----
sci-biology/gfftools/Manifest | 2 -
sci-biology/gfftools/gfftools-0.98d.ebuild | 25 ----------
sci-biology/gfftools/metadata.xml | 12 -----
sci-biology/glean/glean-1.0.1.ebuild | 9 ++--
sci-biology/graf-bin/Manifest | 2 +-
...raf-bin-20171212.ebuild => graf-bin-2.4.ebuild} | 22 +++-----
sci-biology/hydra-sv/Manifest | 1 -
sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild | 24 ---------
sci-biology/hydra-sv/metadata.xml | 8 ---
sci-biology/jannovar-bin/Manifest | 11 ++--
...ar-bin-0.17.ebuild => jannovar-bin-0.35.ebuild} | 17 +++----
sci-biology/jannovar/Manifest | 1 -
sci-biology/jannovar/jannovar-0.17.ebuild | 58 ----------------------
sci-biology/jannovar/metadata.xml | 15 ------
sci-biology/jtreeview-bin/Manifest | 2 +-
...n-1.1.6.4.ebuild => jtreeview-bin-1.2.0.ebuild} | 17 ++++---
sci-biology/jtreeview/Manifest | 2 +-
...eview-1.1.6.4.ebuild => jtreeview-1.2.0.ebuild} | 25 +++++-----
sci-biology/jtreeview/jtreeview-9999.ebuild | 37 ++++++--------
27 files changed, 98 insertions(+), 336 deletions(-)
delete mode 100644 sci-biology/ICC/ICC-2.0.1.ebuild
delete mode 100644 sci-biology/ICC/Manifest
delete mode 100644 sci-biology/ICC/metadata.xml
rename sci-biology/KING/{KING-20161017.ebuild => KING-2.2.5.ebuild} (50%)
delete mode 100644 sci-biology/gfftools/Manifest
delete mode 100644 sci-biology/gfftools/gfftools-0.98d.ebuild
delete mode 100644 sci-biology/gfftools/metadata.xml
rename sci-biology/graf-bin/{graf-bin-20171212.ebuild => graf-bin-2.4.ebuild} (51%)
delete mode 100644 sci-biology/hydra-sv/Manifest
delete mode 100644 sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild
delete mode 100644 sci-biology/hydra-sv/metadata.xml
rename sci-biology/jannovar-bin/{jannovar-bin-0.17.ebuild => jannovar-bin-0.35.ebuild} (71%)
delete mode 100644 sci-biology/jannovar/Manifest
delete mode 100644 sci-biology/jannovar/jannovar-0.17.ebuild
delete mode 100644 sci-biology/jannovar/metadata.xml
rename sci-biology/jtreeview-bin/{jtreeview-bin-1.1.6.4.ebuild => jtreeview-bin-1.2.0.ebuild} (71%)
rename sci-biology/jtreeview/{jtreeview-1.1.6.4.ebuild => jtreeview-1.2.0.ebuild} (57%)
*** syncing science
*** synced science
* Sync succeeded
$ git log --format=%ci -1
$ git show -q --pretty=format:%G? HEAD
$ pmaint regen --use-local-desc --pkg-desc-index -t 1 science
* Cache regenerated successfully
|
GitWeb