diff options
Diffstat (limited to 'R_Overlay.txt')
| -rw-r--r-- | R_Overlay.txt | 309 |
1 files changed, 298 insertions, 11 deletions
diff --git a/R_Overlay.txt b/R_Overlay.txt index f972e75a1124..b64e0d808863 100644 --- a/R_Overlay.txt +++ b/R_Overlay.txt @@ -11,23 +11,310 @@ $ pmaint sync R_Overlay WARNING:pkgcore:repo at '/home/mgorny/sync/gentoo-playground', named 'gentoo-playground', doesn't specify masters in metadata/layout.conf. Please explicitly set masters (use "masters =" if the repo is standalone). receiving incremental file list +eclass/R-packages.eclass +metadata/layout.conf +metadata/md5-cache/sci-BIOC/ +metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0 +metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0 +metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7 +metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10 +metadata/md5-cache/sci-BIOC/pd_ath1_121501-3.12.0 +metadata/md5-cache/sci-BIOC/pd_canine_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_drosophila_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_e_coli_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_genomewidesnp_6-3.14.1 +metadata/md5-cache/sci-BIOC/pd_hg_u133_plus_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_hg_u133a_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_hta_2_0-3.12.1 +metadata/md5-cache/sci-BIOC/pd_mirna_1_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mirna_2_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mirna_3_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mirna_4_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mouse430_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mouse430a_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_mta_1_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_rat230_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_rta_1_0-3.12.0 +metadata/md5-cache/sci-BIOC/pd_x_laevis_2-3.12.0 +metadata/md5-cache/sci-BIOC/pd_yeast_2-3.12.0 +metadata/md5-cache/sci-CRAN/ +metadata/md5-cache/sci-CRAN/CARS-0.1 +metadata/md5-cache/sci-CRAN/DoEstRare-0.2 +metadata/md5-cache/sci-CRAN/INLAutils-0.0.3 +metadata/md5-cache/sci-CRAN/MixtureRegLTIC-0.9.4 +metadata/md5-cache/sci-CRAN/MonetDBLite-0.4.1 +metadata/md5-cache/sci-CRAN/ThresholdROC-2.5 +metadata/md5-cache/sci-CRAN/additiveDEA-1.0 +metadata/md5-cache/sci-CRAN/bayesDP-1.2.1 +metadata/md5-cache/sci-CRAN/censusapi-0.2.1 +metadata/md5-cache/sci-CRAN/dejaVu-0.2.0 +metadata/md5-cache/sci-CRAN/dfped-1.0 +metadata/md5-cache/sci-CRAN/eco-4.0.1 +metadata/md5-cache/sci-CRAN/fasjem-1.1.2 +metadata/md5-cache/sci-CRAN/frailtypack-2.12.3 +metadata/md5-cache/sci-CRAN/glmnetUtils-1.1 +metadata/md5-cache/sci-CRAN/gsw-1.0.4 +metadata/md5-cache/sci-CRAN/hIRT-0.1.2 +metadata/md5-cache/sci-CRAN/hnp-1.2.3 +metadata/md5-cache/sci-CRAN/inlmisc-0.3.0 +metadata/md5-cache/sci-CRAN/merDeriv-0.1.2 +metadata/md5-cache/sci-CRAN/numform-0.0.5 +metadata/md5-cache/sci-CRAN/rmda-1.4 +metadata/md5-cache/sci-CRAN/ropenaq-0.2.2 +metadata/md5-cache/sci-CRAN/rwalkr-0.1.0 +metadata/md5-cache/sci-CRAN/seplyr-0.1.3 +metadata/md5-cache/sci-CRAN/smooth-2.1.0 +metadata/md5-cache/sci-CRAN/structree-1.1.5 +metadata/md5-cache/sci-CRAN/tropAlgebra-0.1.0 +profiles/categories +profiles/repo_name +profiles/use.desc +profiles/desc/ +profiles/desc/r_suggests.desc +profiles/desc/r_suggests.desc.bak +sci-BIOC/BSgenome_Athaliana_TAIR_04232008/BSgenome_Athaliana_TAIR_04232008-1.3.1000.ebuild +sci-BIOC/BSgenome_Athaliana_TAIR_04232008/Manifest +sci-BIOC/BSgenome_Athaliana_TAIR_04232008/metadata.xml +sci-BIOC/BSgenome_Ecoli_NCBI_20080805/BSgenome_Ecoli_NCBI_20080805-1.3.1000.ebuild +sci-BIOC/BSgenome_Ecoli_NCBI_20080805/Manifest +sci-BIOC/BSgenome_Ecoli_NCBI_20080805/metadata.xml +sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/BSgenome_Mfascicularis_NCBI_5_0-1.4.2.ebuild +sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/Manifest +sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/metadata.xml +sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/BSgenome_Tgondii_ToxoDB_7_0-0.99.0.ebuild +sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/Manifest +sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/metadata.xml +sci-BIOC/COSMIC_67/COSMIC_67-1.6.0.ebuild +sci-BIOC/COSMIC_67/Manifest +sci-BIOC/COSMIC_67/metadata.xml +sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0.ebuild +sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/Manifest +sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/metadata.xml +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0.ebuild +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/Manifest +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/metadata.xml +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0.ebuild +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/Manifest +sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/metadata.xml +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/Manifest +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10.ebuild +sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/metadata.xml +sci-BIOC/pd_ath1_121501/Manifest +sci-BIOC/pd_ath1_121501/metadata.xml +sci-BIOC/pd_ath1_121501/pd_ath1_121501-3.12.0.ebuild +sci-BIOC/pd_canine_2/Manifest +sci-BIOC/pd_canine_2/metadata.xml +sci-BIOC/pd_canine_2/pd_canine_2-3.12.0.ebuild +sci-BIOC/pd_drosophila_2/Manifest +sci-BIOC/pd_drosophila_2/metadata.xml +sci-BIOC/pd_drosophila_2/pd_drosophila_2-3.12.0.ebuild +sci-BIOC/pd_e_coli_2/Manifest +sci-BIOC/pd_e_coli_2/metadata.xml +sci-BIOC/pd_e_coli_2/pd_e_coli_2-3.12.0.ebuild +sci-BIOC/pd_genomewidesnp_5/Manifest +sci-BIOC/pd_genomewidesnp_5/metadata.xml +sci-BIOC/pd_genomewidesnp_5/pd_genomewidesnp_5-3.14.1.ebuild +sci-BIOC/pd_genomewidesnp_6/Manifest +sci-BIOC/pd_genomewidesnp_6/metadata.xml +sci-BIOC/pd_genomewidesnp_6/pd_genomewidesnp_6-3.14.1.ebuild +sci-BIOC/pd_hg_u133_plus_2/Manifest +sci-BIOC/pd_hg_u133_plus_2/metadata.xml +sci-BIOC/pd_hg_u133_plus_2/pd_hg_u133_plus_2-3.12.0.ebuild +sci-BIOC/pd_hg_u133a_2/Manifest +sci-BIOC/pd_hg_u133a_2/metadata.xml +sci-BIOC/pd_hg_u133a_2/pd_hg_u133a_2-3.12.0.ebuild +sci-BIOC/pd_hta_2_0/Manifest +sci-BIOC/pd_hta_2_0/metadata.xml +sci-BIOC/pd_hta_2_0/pd_hta_2_0-3.12.1.ebuild +sci-BIOC/pd_mirna_1_0/Manifest +sci-BIOC/pd_mirna_1_0/metadata.xml +sci-BIOC/pd_mirna_1_0/pd_mirna_1_0-3.12.0.ebuild +sci-BIOC/pd_mirna_2_0/Manifest +sci-BIOC/pd_mirna_2_0/metadata.xml +sci-BIOC/pd_mirna_2_0/pd_mirna_2_0-3.12.0.ebuild +sci-BIOC/pd_mirna_3_0/Manifest +sci-BIOC/pd_mirna_3_0/metadata.xml +sci-BIOC/pd_mirna_3_0/pd_mirna_3_0-3.12.0.ebuild +sci-BIOC/pd_mirna_3_1/Manifest +sci-BIOC/pd_mirna_3_1/metadata.xml +sci-BIOC/pd_mirna_3_1/pd_mirna_3_1-3.8.1.ebuild +sci-BIOC/pd_mirna_4_0/Manifest +sci-BIOC/pd_mirna_4_0/metadata.xml +sci-BIOC/pd_mirna_4_0/pd_mirna_4_0-3.12.0.ebuild +sci-BIOC/pd_mouse430_2/Manifest +sci-BIOC/pd_mouse430_2/metadata.xml +sci-BIOC/pd_mouse430_2/pd_mouse430_2-3.12.0.ebuild +sci-BIOC/pd_mouse430a_2/Manifest +sci-BIOC/pd_mouse430a_2/metadata.xml +sci-BIOC/pd_mouse430a_2/pd_mouse430a_2-3.12.0.ebuild +sci-BIOC/pd_mta_1_0/Manifest +sci-BIOC/pd_mta_1_0/metadata.xml +sci-BIOC/pd_mta_1_0/pd_mta_1_0-3.12.0.ebuild +sci-BIOC/pd_rat230_2/Manifest +sci-BIOC/pd_rat230_2/metadata.xml +sci-BIOC/pd_rat230_2/pd_rat230_2-3.12.0.ebuild +sci-BIOC/pd_rta_1_0/Manifest +sci-BIOC/pd_rta_1_0/metadata.xml +sci-BIOC/pd_rta_1_0/pd_rta_1_0-3.12.0.ebuild +sci-BIOC/pd_x_laevis_2/Manifest +sci-BIOC/pd_x_laevis_2/metadata.xml +sci-BIOC/pd_x_laevis_2/pd_x_laevis_2-3.12.0.ebuild +sci-BIOC/pd_yeast_2/Manifest +sci-BIOC/pd_yeast_2/metadata.xml +sci-BIOC/pd_yeast_2/pd_yeast_2-3.12.0.ebuild +sci-CRAN/ +sci-CRAN/CARS/ +sci-CRAN/CARS/CARS-0.1.ebuild +sci-CRAN/CARS/Manifest +sci-CRAN/CARS/metadata.xml +sci-CRAN/DoEstRare/ +sci-CRAN/DoEstRare/DoEstRare-0.2.ebuild +sci-CRAN/DoEstRare/Manifest +sci-CRAN/DoEstRare/metadata.xml +sci-CRAN/FuzzyNumbers_Ext_2/FuzzyNumbers_Ext_2-3.0.ebuild +sci-CRAN/FuzzyNumbers_Ext_2/Manifest +sci-CRAN/FuzzyNumbers_Ext_2/metadata.xml +sci-CRAN/INLAutils/ +sci-CRAN/INLAutils/INLAutils-0.0.3.ebuild +sci-CRAN/INLAutils/Manifest +sci-CRAN/INLAutils/metadata.xml +sci-CRAN/MixtureRegLTIC/ +sci-CRAN/MixtureRegLTIC/Manifest +sci-CRAN/MixtureRegLTIC/MixtureRegLTIC-0.9.4.ebuild +sci-CRAN/MixtureRegLTIC/metadata.xml +sci-CRAN/MonetDBLite/ +sci-CRAN/MonetDBLite/Manifest +sci-CRAN/MonetDBLite/MonetDBLite-0.4.1.ebuild +sci-CRAN/MonetDBLite/metadata.xml +sci-CRAN/ThresholdROC/ +sci-CRAN/ThresholdROC/Manifest +sci-CRAN/ThresholdROC/ThresholdROC-2.5.ebuild +sci-CRAN/ThresholdROC/metadata.xml +sci-CRAN/additiveDEA/ +sci-CRAN/additiveDEA/Manifest +sci-CRAN/additiveDEA/additiveDEA-1.0.ebuild +sci-CRAN/additiveDEA/metadata.xml +sci-CRAN/bayesDP/ +sci-CRAN/bayesDP/Manifest +sci-CRAN/bayesDP/bayesDP-1.2.1.ebuild +sci-CRAN/bayesDP/metadata.xml +sci-CRAN/censusapi/ +sci-CRAN/censusapi/Manifest +sci-CRAN/censusapi/censusapi-0.2.1.ebuild +sci-CRAN/censusapi/metadata.xml +sci-CRAN/dejaVu/ +sci-CRAN/dejaVu/Manifest +sci-CRAN/dejaVu/dejaVu-0.2.0.ebuild +sci-CRAN/dejaVu/metadata.xml +sci-CRAN/dfped/ +sci-CRAN/dfped/Manifest +sci-CRAN/dfped/dfped-1.0.ebuild +sci-CRAN/dfped/metadata.xml +sci-CRAN/eco/ +sci-CRAN/eco/Manifest +sci-CRAN/eco/eco-4.0.1.ebuild +sci-CRAN/eco/metadata.xml +sci-CRAN/fasjem/ +sci-CRAN/fasjem/Manifest +sci-CRAN/fasjem/fasjem-1.1.2.ebuild +sci-CRAN/fasjem/metadata.xml +sci-CRAN/frailtypack/ +sci-CRAN/frailtypack/Manifest +sci-CRAN/frailtypack/frailtypack-2.12.3.ebuild +sci-CRAN/frailtypack/metadata.xml +sci-CRAN/glmnetUtils/ +sci-CRAN/glmnetUtils/Manifest +sci-CRAN/glmnetUtils/glmnetUtils-1.1.ebuild +sci-CRAN/glmnetUtils/metadata.xml +sci-CRAN/gsw/ +sci-CRAN/gsw/Manifest +sci-CRAN/gsw/gsw-1.0.4.ebuild +sci-CRAN/gsw/metadata.xml +sci-CRAN/hIRT/ +sci-CRAN/hIRT/Manifest +sci-CRAN/hIRT/hIRT-0.1.2.ebuild +sci-CRAN/hIRT/metadata.xml +sci-CRAN/hnp/ +sci-CRAN/hnp/Manifest +sci-CRAN/hnp/hnp-1.2.3.ebuild +sci-CRAN/hnp/metadata.xml +sci-CRAN/inlmisc/ +sci-CRAN/inlmisc/Manifest +sci-CRAN/inlmisc/inlmisc-0.3.0.ebuild +sci-CRAN/inlmisc/metadata.xml +sci-CRAN/merDeriv/ +sci-CRAN/merDeriv/Manifest +sci-CRAN/merDeriv/merDeriv-0.1.2.ebuild +sci-CRAN/merDeriv/metadata.xml +sci-CRAN/numform/ +sci-CRAN/numform/Manifest +sci-CRAN/numform/metadata.xml +sci-CRAN/numform/numform-0.0.5.ebuild +sci-CRAN/rmda/ +sci-CRAN/rmda/Manifest +sci-CRAN/rmda/metadata.xml +sci-CRAN/rmda/rmda-1.4.ebuild +sci-CRAN/ropenaq/ +sci-CRAN/ropenaq/Manifest +sci-CRAN/ropenaq/metadata.xml +sci-CRAN/ropenaq/ropenaq-0.2.2.ebuild +sci-CRAN/rwalkr/ +sci-CRAN/rwalkr/Manifest +sci-CRAN/rwalkr/metadata.xml +sci-CRAN/rwalkr/rwalkr-0.1.0.ebuild +sci-CRAN/seplyr/ +sci-CRAN/seplyr/Manifest +sci-CRAN/seplyr/metadata.xml +sci-CRAN/seplyr/seplyr-0.1.3.ebuild +sci-CRAN/smooth/ +sci-CRAN/smooth/Manifest +sci-CRAN/smooth/metadata.xml +sci-CRAN/smooth/smooth-2.1.0.ebuild +sci-CRAN/structree/ +sci-CRAN/structree/Manifest +sci-CRAN/structree/metadata.xml +sci-CRAN/structree/structree-1.1.5.ebuild +sci-CRAN/tropAlgebra/ +sci-CRAN/tropAlgebra/Manifest +sci-CRAN/tropAlgebra/metadata.xml +sci-CRAN/tropAlgebra/tropAlgebra-0.1.0.ebuild -Number of files: 115,817 (reg: 102,224, dir: 13,593) -Number of created files: 0 +Number of files: 115,903 (reg: 102,300, dir: 13,603) +Number of created files: 86 (reg: 76, dir: 10) Number of deleted files: 0 -Number of regular files transferred: 0 -Total file size: 93.50M bytes -Total transferred file size: 0 bytes -Literal data: 0 bytes +Number of regular files transferred: 255 +Total file size: 93.58M bytes +Total transferred file size: 343.75K bytes +Literal data: 343.75K bytes Matched data: 0 bytes -File list size: 3.18M +File list size: 3.20M File list generation time: 0.001 seconds File list transfer time: 0.000 seconds -Total bytes sent: 17.78K -Total bytes received: 3.40M +Total bytes sent: 21.18K +Total bytes received: 3.59M -sent 17.78K bytes received 3.40M bytes 206.89K bytes/sec -total size is 93.50M speedup is 27.39 +sent 21.18K bytes received 3.59M bytes 167.74K bytes/sec +total size is 93.58M speedup is 25.95 *** syncing R_Overlay *** synced R_Overlay * Sync succeeded |