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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
DESCRIPTION="Sequence analysis using profile hidden Markov models"
LICENSE="GPL-2"
HOMEPAGE="http://hmmer.janelia.org/"
SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
SLOT="0"
IUSE="threads test"
KEYWORDS="amd64 x86"
DEPEND=""
RDEPEND=""
src_configure() {
econf \
--host=${CHOST} \
--prefix="${D}"/usr \
--exec_prefix="${D}"/usr \
--mandir="${D}"/usr/share/man \
--enable-lfs \
$(use_enable threads)
}
src_install() {
emake DESTDIR="${D}" install
pushd src >/dev/null || die
dolib libhmmer.a
insinto /usr/include/hmmer
doins *.h
popd >/dev/null || die
pushd squid >/dev/null || die
dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
dolib libsquid.a
insinto /usr/include/hmmer
doins *.h
popd >/dev/null || die
dodoc NOTES
newdoc 00README README
insinto /usr/share/doc/${PF}
doins Userguide.pdf
}
src_test() {
emake check
}
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