diff options
Diffstat (limited to 'sci-biology/mira')
| -rw-r--r-- | sci-biology/mira/files/mira-4.0.2-cmath.patch | 14 | ||||
| -rw-r--r-- | sci-biology/mira/mira-4.0.2.ebuild | 6 |
2 files changed, 18 insertions, 2 deletions
diff --git a/sci-biology/mira/files/mira-4.0.2-cmath.patch b/sci-biology/mira/files/mira-4.0.2-cmath.patch new file mode 100644 index 000000000000..a4a020177af7 --- /dev/null +++ b/sci-biology/mira/files/mira-4.0.2-cmath.patch @@ -0,0 +1,14 @@ +--- mira-4.0.2/src/mira/ads.C ++++ mira-4.0.2/src/mira/ads.C +@@ -31,10 +31,11 @@ + * Routines for computing scores and some other classification number are + * provided, too. + * + */ + ++#include <cmath> + + #include "ads.H" + + #include "errorhandling/errorhandling.H" + #include "util/dptools.H" diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild index 3814d2dbd749..758e30b28e36 100644 --- a/sci-biology/mira/mira-4.0.2.ebuild +++ b/sci-biology/mira/mira-4.0.2.ebuild @@ -41,7 +41,8 @@ src_prepare() { find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die epatch \ "${FILESDIR}"/${PN}-3.4.0.2-boost-1.50.patch \ - "${FILESDIR}"/${P}-cout.patch + "${FILESDIR}"/${P}-cout.patch \ + "${FILESDIR}"/${P}-cmath.patch sed \ -e "s:-O[23]::g" \ @@ -50,9 +51,10 @@ src_prepare() { eautoreconf - # Remove C++ source files that were built with flex by upstream. + # Remove C++ source files that upstream built with flex. local f local PREBUILT_CXX_LEXER_FILES=( + "$S"/src/caf/caf_flexer.cc "$S"/src/io/exp_flexer.cc "$S"/src/mira/parameters_flexer.cc ) |