Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
Diffstat
-rw-r--r--metadata/md5-cache/dev-python/nbval-0.9.610
-rw-r--r--metadata/md5-cache/dev-python/rpy-3.4.517
-rw-r--r--metadata/md5-cache/dev-tex/pythontex-0.1815
-rw-r--r--metadata/md5-cache/gnome-extra/libgsf-1.14.4816
-rw-r--r--metadata/md5-cache/sci-chemistry/MDAnalysis-2.0.016
-rw-r--r--metadata/md5-cache/sci-chemistry/mdtraj-1.9.717
-rw-r--r--metadata/pkg_desc_index10
-rw-r--r--metadata/timestamp.chk2
8 files changed, 92 insertions, 11 deletions
diff --git a/metadata/md5-cache/dev-python/nbval-0.9.6 b/metadata/md5-cache/dev-python/nbval-0.9.6
index 5f7cb0f8254b..502d4dcdb63c 100644
--- a/metadata/md5-cache/dev-python/nbval-0.9.6
+++ b/metadata/md5-cache/dev-python/nbval-0.9.6
@@ -1,16 +1,16 @@
-BDEPEND=test? ( dev-python/sympy[python_targets_python3_8(-)?,python_targets_python3_9(-)?] ) test? ( dev-python/coverage[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/ipykernel[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/jupyter_client[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/nbformat[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/pytest[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/pytest-cov[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/six[python_targets_python3_8(-)?,python_targets_python3_9(-)?] >=dev-python/pytest-4.5.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?]
+BDEPEND=test? ( dev-python/sympy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) test? ( dev-python/coverage[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/ipykernel[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/jupyter_client[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/nbformat[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytest[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytest-cov[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/six[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-4.5.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=A py.test plugin to validate Jupyter notebooks
EAPI=7
HOMEPAGE=https://github.com/computationalmodelling/nbval
INHERIT=distutils-r1
-IUSE=test python_targets_python3_8 python_targets_python3_9
+IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10
KEYWORDS=amd64 x86
LICENSE=BSD
-RDEPEND=dev-python/coverage[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/ipykernel[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/jupyter_client[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/nbformat[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/pytest[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/pytest-cov[python_targets_python3_8(-)?,python_targets_python3_9(-)?] dev-python/six[python_targets_python3_8(-)?,python_targets_python3_9(-)?] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?]
-REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 )
+RDEPEND=dev-python/coverage[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/ipykernel[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/jupyter_client[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/nbformat[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytest[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytest-cov[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/six[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://pypi/n/nbval/nbval-0.9.6.tar.gz
_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib 8a0248f83ae77f945d376ff4a7953257 multibuild 05a584848db4901c97fcd94ae7cc3a97 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 python-utils-r1 a8b7938ade305f087865de7e52d079b5 python-r1 e574a3642f886323f18f867ecc4d91c4 distutils-r1 63df6e5a6bbff9ec3cf60cf7cdc94f23
-_md5_=c3d5440d6629628b51b4f706f5076fee
+_md5_=27c23406c667239309132cb4a6db24ac
diff --git a/metadata/md5-cache/dev-python/rpy-3.4.5 b/metadata/md5-cache/dev-python/rpy-3.4.5
new file mode 100644
index 000000000000..de5d4f3ac3a7
--- /dev/null
+++ b/metadata/md5-cache/dev-python/rpy-3.4.5
@@ -0,0 +1,17 @@
+BDEPEND=python_targets_python3_8? ( dev-lang/python:3.8[sqlite] ) python_targets_python3_9? ( dev-lang/python:3.9[sqlite] ) python_targets_python3_10? ( dev-lang/python:3.10[sqlite] ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( x11-base/xorg-server[xvfb] x11-apps/xhost )
+DEFINED_PHASES=compile configure install prepare test
+DESCRIPTION=Python interface to the R Programming Language
+EAPI=8
+HOMEPAGE=https://rpy.sourceforge.net/ https://pypi.org/project/rpy2/
+INHERIT=distutils-r1 virtualx
+IUSE=python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 test
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=AGPL-3 GPL-2 LGPL-2.1 MPL-1.1
+PDEPEND=dev-python/ipython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+RDEPEND=>=dev-lang/R-3.2 dev-python/cffi[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/jinja[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pandas-0.13.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytz[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/tzlocal[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( dev-lang/python:3.8[sqlite] ) python_targets_python3_9? ( dev-lang/python:3.9[sqlite] ) python_targets_python3_10? ( dev-lang/python:3.10[sqlite] ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
+RESTRICT=test !test? ( test )
+SLOT=0
+SRC_URI=mirror://pypi/r/rpy2/rpy2-3.4.5.tar.gz
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib 8a0248f83ae77f945d376ff4a7953257 multibuild 05a584848db4901c97fcd94ae7cc3a97 python-utils-r1 a8b7938ade305f087865de7e52d079b5 python-r1 e574a3642f886323f18f867ecc4d91c4 distutils-r1 63df6e5a6bbff9ec3cf60cf7cdc94f23 virtualx fa024aa649b6bd544144bf94893d402c
+_md5_=37b3d0e100dece0ba9d2ea37e6f480f6
diff --git a/metadata/md5-cache/dev-tex/pythontex-0.18 b/metadata/md5-cache/dev-tex/pythontex-0.18
new file mode 100644
index 000000000000..783eaf804254
--- /dev/null
+++ b/metadata/md5-cache/dev-tex/pythontex-0.18
@@ -0,0 +1,15 @@
+DEFINED_PHASES=compile install postinst postrm
+DEPEND=python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-texlive/texlive-latexextra-2016 dev-tex/pgf virtual/latex-base >=sys-apps/texinfo-4.2-r5
+DESCRIPTION=Fast Access to Python from within LaTeX
+EAPI=7
+HOMEPAGE=https://github.com/gpoore/pythontex
+INHERIT=latex-package python-r1
+IUSE=doc highlighting python_targets_python3_8 python_targets_python3_9 python_targets_python3_10
+KEYWORDS=~amd64 ~ppc ~riscv ~x86
+LICENSE=LPPL-1.3 BSD
+RDEPEND=python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-texlive/texlive-latexextra-2016 dev-tex/pgf dev-python/pygments[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] virtual/latex-base
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
+SLOT=0
+SRC_URI=https://github.com/gpoore/pythontex/archive/v0.18.tar.gz -> pythontex-0.18.tar.gz
+_eclasses_=latex-package e5f296c98696dd02059bc6a5a03282e2 multibuild 05a584848db4901c97fcd94ae7cc3a97 eapi8-dosym cd7d420bb5be5ee079f27239ce76b8f5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib 8a0248f83ae77f945d376ff4a7953257 python-utils-r1 a8b7938ade305f087865de7e52d079b5 python-r1 e574a3642f886323f18f867ecc4d91c4
+_md5_=0d44abf5f93a5abb8dec241fc9a0e9c3
diff --git a/metadata/md5-cache/gnome-extra/libgsf-1.14.48 b/metadata/md5-cache/gnome-extra/libgsf-1.14.48
new file mode 100644
index 000000000000..ecdd4f63ce57
--- /dev/null
+++ b/metadata/md5-cache/gnome-extra/libgsf-1.14.48
@@ -0,0 +1,16 @@
+BDEPEND=>=app-portage/elt-patches-20170815 app-arch/xz-utils
+DEFINED_PHASES=compile configure install postinst postrm preinst prepare
+DEPEND=>=dev-libs/glib-2.36:2 >=dev-libs/libxml2-2.4.16:2 sys-libs/zlib bzip2? ( app-arch/bzip2 ) gtk? ( x11-libs/gdk-pixbuf:2 virtual/imagemagick-tools ) introspection? ( >=dev-libs/gobject-introspection-1:= ) >=dev-util/gtk-doc-am-1.12 dev-libs/gobject-introspection-common >=sys-devel/gettext-0.19.6 virtual/pkgconfig
+DESCRIPTION=The GNOME Structured File Library
+EAPI=8
+HOMEPAGE=https://gitlab.gnome.org/GNOME/libgsf
+IDEPEND=dev-util/desktop-file-utils x11-misc/shared-mime-info
+INHERIT=gnome2
+IUSE=bzip2 gtk +introspection
+KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x64-solaris ~x86-solaris
+LICENSE=GPL-2 LGPL-2.1
+RDEPEND=>=dev-libs/glib-2.36:2 >=dev-libs/libxml2-2.4.16:2 sys-libs/zlib bzip2? ( app-arch/bzip2 ) gtk? ( x11-libs/gdk-pixbuf:2 virtual/imagemagick-tools ) introspection? ( >=dev-libs/gobject-introspection-1:= )
+SLOT=0/114
+SRC_URI=mirror://gnome/sources/libgsf/1.14/libgsf-1.14.48.tar.xz
+_eclasses_=toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib 8a0248f83ae77f945d376ff4a7953257 libtool 241a8f577b9781a42a7421e53448a44e gnome.org b5c48cddff1da36a205d924d722b28c9 xdg-utils 4f29a8b760a594a212abe9c2ba957c31 gnome2-utils 239e7afa214b50012f83b8bb61de7555 xdg 6024fbc93167fad782e2032933654857 gnome2 397207e07bdf58b07ce295d0bc1049fe
+_md5_=bb4a99049818c854e0d0f738ce8cf0bc
diff --git a/metadata/md5-cache/sci-chemistry/MDAnalysis-2.0.0 b/metadata/md5-cache/sci-chemistry/MDAnalysis-2.0.0
new file mode 100644
index 000000000000..ce4f8dc6113a
--- /dev/null
+++ b/metadata/md5-cache/sci-chemistry/MDAnalysis-2.0.0
@@ -0,0 +1,16 @@
+BDEPEND=>=dev-python/numpy-1.16.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/scipy-1.0.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=sci-biology/biopython-1.71[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/networkx-1.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/GridDataFormats-0.4.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/joblib-0.12[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/matplotlib-1.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/mmtf-python-1.0.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/tqdm-4.43.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/gsd-1.9.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/threadpoolctl[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( >=dev-python/numpy-1.16.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/scipy-1.0.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=sci-biology/biopython-1.71[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/networkx-1.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/GridDataFormats-0.4.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/joblib-0.12[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/matplotlib-1.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/mmtf-python-1.0.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/tqdm-4.43.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/gsd-1.9.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/threadpoolctl[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7-r4[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+DEFINED_PHASES=compile configure install prepare test
+DESCRIPTION=A python library to analyze and manipulate molecular dynamics trajectories
+EAPI=8
+HOMEPAGE=https://www.mdanalysis.org
+INHERIT=distutils-r1
+IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=GPL-2
+RDEPEND=>=dev-python/numpy-1.16.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/scipy-1.0.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=sci-biology/biopython-1.71[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/networkx-1.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/GridDataFormats-0.4.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/joblib-0.12[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/matplotlib-1.5.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/mmtf-python-1.0.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/tqdm-4.43.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/gsd-1.9.3[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/threadpoolctl[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
+RESTRICT=test !test? ( test )
+SLOT=0
+SRC_URI=mirror://pypi/M/MDAnalysis/MDAnalysis-2.0.0.tar.gz
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib 8a0248f83ae77f945d376ff4a7953257 multibuild 05a584848db4901c97fcd94ae7cc3a97 python-utils-r1 a8b7938ade305f087865de7e52d079b5 python-r1 e574a3642f886323f18f867ecc4d91c4 distutils-r1 63df6e5a6bbff9ec3cf60cf7cdc94f23
+_md5_=ee1c9d9dd59c78af672cdcd2522e7f83
diff --git a/metadata/md5-cache/sci-chemistry/mdtraj-1.9.7 b/metadata/md5-cache/sci-chemistry/mdtraj-1.9.7
new file mode 100644
index 000000000000..e2aa585c867b
--- /dev/null
+++ b/metadata/md5-cache/sci-chemistry/mdtraj-1.9.7
@@ -0,0 +1,17 @@
+BDEPEND=test? ( dev-python/astunparse[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/astor[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytables[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pyparsing[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-4.5.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+DEFINED_PHASES=compile configure install prepare test
+DEPEND=dev-python/astunparse[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/astor[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytables[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pyparsing[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/jupyter_client[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/nbformat[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-libs/scikit-learn[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] )
+DESCRIPTION=Read, write and analyze MD trajectories with only a few lines of Python code
+EAPI=8
+HOMEPAGE=http://mdtraj.org
+INHERIT=distutils-r1
+IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=GPL-2
+RDEPEND=dev-python/astunparse[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/astor[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pytables[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pyparsing[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
+RESTRICT=!test? ( test )
+SLOT=0
+SRC_URI=mirror://pypi/m/mdtraj/mdtraj-1.9.7.tar.gz
+_eclasses_=multiprocessing 61c959fc55c15c00bbb1079d6a71370b toolchain-funcs badd6e329e1f3e6bee99b35bf8763ce8 multilib 8a0248f83ae77f945d376ff4a7953257 multibuild 05a584848db4901c97fcd94ae7cc3a97 python-utils-r1 a8b7938ade305f087865de7e52d079b5 python-r1 e574a3642f886323f18f867ecc4d91c4 distutils-r1 63df6e5a6bbff9ec3cf60cf7cdc94f23
+_md5_=ac95eca6ed249047e20449edf5336ffd
diff --git a/metadata/pkg_desc_index b/metadata/pkg_desc_index
index 2a5a5fa47e5c..91364562486c 100644
--- a/metadata/pkg_desc_index
+++ b/metadata/pkg_desc_index
@@ -9378,7 +9378,7 @@ dev-python/rosdistro 0.8.3 9999: Tools to work with catkinized rosdistro files
dev-python/rospkg 1.3.0 9999: Standalone Python library for the ROS package system
dev-python/routes 2.5.1: A re-implementation of Rails routes system, mapping URLs to Controllers/Actions
dev-python/rply 0.7.8: Pure python parser generator that also works with RPython
-dev-python/rpy 3.4.2: Python interface to the R Programming Language
+dev-python/rpy 3.4.2 3.4.5: Python interface to the R Programming Language
dev-python/rpyc 5.0.1: Remote Python Call (RPyC), a transparent and symmetric RPC library
dev-python/rq 1.10 1.10.1: simple, lightweight library for creating and processing background jobs
dev-python/rsa 4.8: Pure-Python RSA implementation
@@ -10886,7 +10886,7 @@ dev-tex/lgrind 3.67-r3: A pretty printer for various programming languages with
dev-tex/pdfannotextractor 0.1l-r1: Extract annotations from pdf files
dev-tex/pgf 3.1.4b-r2 3.1.5b: The TeX Portable Graphic Format
dev-tex/pscyr 0.4d_beta9: Type1 cyrillic fonts collection
-dev-tex/pythontex 0.17: Fast Access to Python from within LaTeX
+dev-tex/pythontex 0.17 0.18: Fast Access to Python from within LaTeX
dev-tex/rail 1.2_p1-r1: Offers syntax/railroad diagrams
dev-tex/rubber 1.5.1-r1 1.6.0-r1 9999: A LaTeX wrapper for automatically building documents
dev-tex/serienbrief 0.2.5: Easy creation of form letters written in LaTeX
@@ -12248,7 +12248,7 @@ gnome-extra/gnome-weather 40.0 40.1 41.0: A weather application for GNOME
gnome-extra/gtkhtml 4.10.0-r2: Lightweight HTML rendering/printing/editing engine
gnome-extra/gucharmap 3.0.1-r200 13.0.8 14.0.1: Unicode character map viewer and library
gnome-extra/libgda 5.2.9: GNOME database access library
-gnome-extra/libgsf 1.14.47: The GNOME Structured File Library
+gnome-extra/libgsf 1.14.47 1.14.48: The GNOME Structured File Library
gnome-extra/mousetweaks 3.32.0: Mouse accessibility enhancements for the GNOME desktop
gnome-extra/nautilus-dropbox 2019.02.14 2020.03.04: Dropbox Nautilus Extension
gnome-extra/nautilus-sendto 3.8.6: A nautilus extension for sending files to locations
@@ -16250,7 +16250,7 @@ sci-calculators/units 2.21: Unit conversion program
sci-calculators/wcalc 2.5: A flexible command-line scientific calculator
sci-calculators/xsv 0.13.0: A fast CSV command line toolkit written in Rust
sci-chemistry/GromacsWrapper 0.8.0-r1: Python framework for Gromacs
-sci-chemistry/MDAnalysis 1.0.0: A python library to analyze and manipulate molecular dynamics trajectories
+sci-chemistry/MDAnalysis 1.0.0 2.0.0: A python library to analyze and manipulate molecular dynamics trajectories
sci-chemistry/aqua 3.2-r3: Program suite in this distribution calculates restraint violations
sci-chemistry/autodock 4.2.6: A suite of automated docking tools
sci-chemistry/autodock_vina 1.1.2-r1: Program for drug discovery, molecular docking and virtual screening
@@ -16270,7 +16270,7 @@ sci-chemistry/gnome-chemistry-utils 0.14.17_p6-r1: Programs and library containi
sci-chemistry/gperiodic 3.0.3: Periodic table application for Linux
sci-chemistry/gromacs 2018.8-r1 2019.6-r1 2019.6-r2 2020.4-r1 2020.6-r1 2021.2-r1 2021.3-r1 2021.4 2021.9999 2022_beta1-r2 2022.9999 9999: The ultimate molecular dynamics simulation package
sci-chemistry/ksdssp 040728-r1: An open source implementation of sci-chemistry/dssp
-sci-chemistry/mdtraj 1.9.4: Read, write and analyze MD trajectories with only a few lines of Python code
+sci-chemistry/mdtraj 1.9.4 1.9.7: Read, write and analyze MD trajectories with only a few lines of Python code
sci-chemistry/mm-align 20120321: Protein Complex Structural Alignment
sci-chemistry/modeller 9.25: Homology or comparative modeling of protein three-dimensional structures
sci-chemistry/molden 5.5: Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac
diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk
index a75541e6da4b..c06aa0a2993b 100644
--- a/metadata/timestamp.chk
+++ b/metadata/timestamp.chk
@@ -1 +1 @@
-Tue, 28 Dec 2021 13:51:44 +0000
+Tue, 28 Dec 2021 14:21:49 +0000