diff options
| -rw-r--r-- | metadata/md5-cache/dev-vcs/git-2.12.0 | 15 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/sim4-20030921 | 10 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/sim4-20030921-r2 (renamed from metadata/md5-cache/sci-biology/sim4-20030921-r1) | 8 | ||||
| -rw-r--r-- | metadata/md5-cache/sci-biology/trf-4.04-r1 (renamed from metadata/md5-cache/sci-biology/trf-4.04) | 5 | ||||
| -rw-r--r-- | metadata/pkg_desc_index | 6 | ||||
| -rw-r--r-- | metadata/timestamp.chk | 2 | ||||
| -rw-r--r-- | profiles/use.local.desc | 1 |
7 files changed, 26 insertions, 21 deletions
diff --git a/metadata/md5-cache/dev-vcs/git-2.12.0 b/metadata/md5-cache/dev-vcs/git-2.12.0 new file mode 100644 index 000000000000..5432d49215c7 --- /dev/null +++ b/metadata/md5-cache/dev-vcs/git-2.12.0 @@ -0,0 +1,15 @@ +DEFINED_PHASES=compile configure install postinst postrm prepare setup test unpack +DEPEND=!libressl? ( dev-libs/openssl:0= ) libressl? ( dev-libs/libressl:= ) libsecret? ( app-crypt/libsecret ) sys-libs/zlib pcre? ( dev-libs/libpcre ) perl? ( dev-lang/perl:=[-build(-)] ) tk? ( dev-lang/tk:0= ) curl? ( net-misc/curl webdav? ( dev-libs/expat ) ) emacs? ( virtual/emacs ) doc? ( app-text/asciidoc app-text/docbook2X sys-apps/texinfo app-text/xmlto ) nls? ( sys-devel/gettext ) test? ( app-crypt/gnupg ) virtual/pkgconfig +DESCRIPTION=stupid content tracker: distributed VCS designed for speed and efficiency +EAPI=6 +HOMEPAGE=http://www.git-scm.com/ +IUSE=+blksha1 +curl cgi doc emacs +gpg gtk highlight +iconv libressl libsecret mediawiki mediawiki-experimental +nls +pcre +perl +python ppcsha1 tk +threads +webdav xinetd cvs subversion test linguas_bg linguas_ca linguas_de linguas_fr linguas_is linguas_it linguas_ko linguas_pt_PT linguas_ru linguas_sv linguas_vi linguas_zh_CN python_targets_python2_7 +KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris +LICENSE=GPL-2 +RDEPEND=!libressl? ( dev-libs/openssl:0= ) libressl? ( dev-libs/libressl:= ) libsecret? ( app-crypt/libsecret ) sys-libs/zlib pcre? ( dev-libs/libpcre ) perl? ( dev-lang/perl:=[-build(-)] ) tk? ( dev-lang/tk:0= ) curl? ( net-misc/curl webdav? ( dev-libs/expat ) ) emacs? ( virtual/emacs ) gpg? ( app-crypt/gnupg ) mediawiki? ( dev-perl/DateTime-Format-ISO8601 dev-perl/HTML-Tree dev-perl/MediaWiki-API ) perl? ( dev-perl/Error dev-perl/Net-SMTP-SSL dev-perl/Authen-SASL cgi? ( dev-perl/CGI highlight? ( app-text/highlight ) ) cvs? ( >=dev-vcs/cvsps-2.1:0 dev-perl/DBI dev-perl/DBD-SQLite ) subversion? ( dev-vcs/subversion[-dso,perl] dev-perl/libwww-perl dev-perl/TermReadKey ) ) python? ( gtk? ( >=dev-python/pygtk-2.8[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] >=dev-python/pygtksourceview-2.10.1-r1:2[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) +REQUIRED_USE=cgi? ( perl ) cvs? ( perl ) mediawiki? ( perl ) mediawiki-experimental? ( mediawiki ) subversion? ( perl ) webdav? ( curl ) gtk? ( python ) python? ( python_targets_python2_7 ) +SLOT=0 +SRC_URI=mirror://kernel/software/scm/git/git-2.12.0.tar.xz mirror://kernel/software/scm/git/git-manpages-2.12.0.tar.xz doc? ( mirror://kernel/software/scm/git/git-htmldocs-2.12.0.tar.xz ) +_eclass_exported_funcs=pkg_postrm:- pkg_postinst:- pkg_setup:- src_unpack:- src_prepare:- src_configure:- src_compile:- src_test:- src_install:- +_eclasses_=bash-completion-r1 acf715fa09463f043fbfdc1640f3fb85 elisp-common 9f56c4e9bf1282dbfc2a5a09e1124e74 eutils 708f85bc1bf00876604e223fb56e062a l10n e26ea0642846685782f1813642e7ff0f multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing eb9be4b678c4e71f3f530a767df31912 perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-single-r1 6793fc854691a2320226801400573568 python-utils-r1 50dad5f912d4c16c130f5679777f25e8 systemd 5b6ca8b2fc1307ca593223f327342c96 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 +_md5_=cee0ce957b941129298b494f7ccc2f45 diff --git a/metadata/md5-cache/sci-biology/sim4-20030921 b/metadata/md5-cache/sci-biology/sim4-20030921 deleted file mode 100644 index 1b5199a3668b..000000000000 --- a/metadata/md5-cache/sci-biology/sim4-20030921 +++ /dev/null @@ -1,10 +0,0 @@ -DEFINED_PHASES=install -DESCRIPTION=A program to align cDNA and genomic DNA -EAPI=0 -HOMEPAGE=http://globin.cse.psu.edu/html/docs/sim4.html -KEYWORDS=x86 ~ppc -LICENSE=GPL-2 -SLOT=0 -SRC_URI=http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz -_eclass_exported_funcs=src_install:- -_md5_=1f9553f10941eb2db6ae6c98bda33f30 diff --git a/metadata/md5-cache/sci-biology/sim4-20030921-r1 b/metadata/md5-cache/sci-biology/sim4-20030921-r2 index 1d43836abfa1..67c96e2cadae 100644 --- a/metadata/md5-cache/sci-biology/sim4-20030921-r1 +++ b/metadata/md5-cache/sci-biology/sim4-20030921-r2 @@ -1,11 +1,11 @@ -DEFINED_PHASES=compile install +DEFINED_PHASES=configure install DESCRIPTION=A program to align cDNA and genomic DNA -EAPI=0 +EAPI=6 HOMEPAGE=http://globin.cse.psu.edu/html/docs/sim4.html KEYWORDS=~amd64 ~ppc ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz -_eclass_exported_funcs=src_compile:- src_install:- +_eclass_exported_funcs=src_configure:- src_install:- _eclasses_=multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=e1e0b2ce50bc94c54d2fb0ef73b85af3 +_md5_=f2763a156e4cea98e9bbfefc06fbc776 diff --git a/metadata/md5-cache/sci-biology/trf-4.04 b/metadata/md5-cache/sci-biology/trf-4.04-r1 index 23479ef1dcd9..8e8d66ad5a0a 100644 --- a/metadata/md5-cache/sci-biology/trf-4.04 +++ b/metadata/md5-cache/sci-biology/trf-4.04-r1 @@ -1,6 +1,6 @@ DEFINED_PHASES=install unpack DESCRIPTION=Tandem Repeats Finder -EAPI=4 +EAPI=6 HOMEPAGE=http://tandem.bu.edu/trf/trf.html KEYWORDS=amd64 x86 LICENSE=trf @@ -8,5 +8,4 @@ RESTRICT=mirror bindist SLOT=0 SRC_URI=http://tandem.bu.edu/trf/downloads/trf404.linux _eclass_exported_funcs=src_unpack:- src_install:- -_eclasses_=eutils 708f85bc1bf00876604e223fb56e062a multilib 165fc17c38d1b11dac2008280dab6e80 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 -_md5_=406c2b2b8a1c6b562b03f9449a9ff93c +_md5_=a4bdadc1abe6a3101b66f7bb5c713494 diff --git a/metadata/pkg_desc_index b/metadata/pkg_desc_index index 761db8fc4d59..0edfcf3f4151 100644 --- a/metadata/pkg_desc_index +++ b/metadata/pkg_desc_index @@ -10411,7 +10411,7 @@ dev-vcs/darcs 2.8.4-r6 2.10.1 2.10.3-r1 2.12.0 2.12.4 2.12.5: a distributed, int dev-vcs/easygit 1.6.5.5: Easy GIT is a wrapper for git, designed to make git easy to learn and use dev-vcs/fossil 1.34 1.35: Simple, high-reliability, source control management, and more dev-vcs/giggle 0.7-r1 0.7-r2: GTK+ Frontend for GIT -dev-vcs/git 2.7.3-r1 2.7.4 2.8.4 2.9.3 2.10.1 2.10.2 2.11.0 2.11.1 9999 9999-r1 9999-r2 9999-r3: stupid content tracker: distributed VCS designed for speed and efficiency +dev-vcs/git 2.7.3-r1 2.7.4 2.8.4 2.9.3 2.10.1 2.10.2 2.11.0 2.11.1 2.12.0 9999 9999-r1 9999-r2 9999-r3: stupid content tracker: distributed VCS designed for speed and efficiency dev-vcs/git-annex 6.20160126 6.20160318 6.20160419 6.20160923 6.20160923-r1 6.20161031 6.20170101: manage files with git, without checking their contents into git dev-vcs/git-bz 0.2015.09.08 9999: Bugzilla subcommand for git dev-vcs/git-bzr-ng 0_pre20120822-r2: Git subcommand providing a bidirectional bridge to Bazaar repositories @@ -15871,7 +15871,7 @@ sci-biology/seaview 4.3.5 4.5.4 4.6: A graphical multiple sequence alignment edi sci-biology/seqan 1.4.2-r1 2.2.0-r1: C++ Sequence Analysis Library sci-biology/shrimp 2.0.1 2.2.3: SHort Read Mapping Package sci-biology/sibsim4 0.20: A rewrite and improvement upon sim4, a DNA-mRNA aligner -sci-biology/sim4 20030921 20030921-r1: A program to align cDNA and genomic DNA +sci-biology/sim4 20030921-r2: A program to align cDNA and genomic DNA sci-biology/snpfile 2.0.1 2.0.1-r1: A library and API for manipulating large SNP datasets sci-biology/stride 20011129-r1: Protein secondary structure assignment from atomic coordinates sci-biology/t-coffee 9.03.1318-r1 11.00-r1: A multiple sequence alignment package @@ -15879,7 +15879,7 @@ sci-biology/tophat 2.1.1-r3: Python-based splice junction mapper for RNA-Seq rea sci-biology/transfac 3.2-r1: A database of eucaryotic transcription factors sci-biology/tree-puzzle 5.2: Maximum likelihood analysis for nucleotide, amino acid, and two-state data sci-biology/treeviewx 0.5.1-r3: A phylogenetic tree viewer -sci-biology/trf 4.04: Tandem Repeats Finder +sci-biology/trf 4.04-r1: Tandem Repeats Finder sci-biology/trnascan-se 1.23-r2 1.31: tRNA detection in large-scale genome sequences sci-biology/uchime 4.2.40: Fast, accurate chimera detection sci-biology/ucsc-genome-browser 260: The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk index 32f9e8214ecf..57025e46476f 100644 --- a/metadata/timestamp.chk +++ b/metadata/timestamp.chk @@ -1 +1 @@ -Sat, 25 Feb 2017 20:33:15 +0000 +Sat, 25 Feb 2017 20:44:54 +0000 diff --git a/profiles/use.local.desc b/profiles/use.local.desc index 29ad09470dc3..5aada497dc1d 100644 --- a/profiles/use.local.desc +++ b/profiles/use.local.desc @@ -2838,6 +2838,7 @@ dev-vcs/git:curl - Support fetching and pushing (requires webdav too) over http: dev-vcs/git:gpg - Pull in gnupg for signing -- without gnupg, attempts at signing will fail at runtime! dev-vcs/git:gtk - Include the gitview contrib tool dev-vcs/git:highlight - GitWeb support for app-text/highlight +dev-vcs/git:libsecret - Enable libsecret support to store login credentials dev-vcs/git:mediawiki - Support pulling and pushing from MediaWiki dev-vcs/git:mediawiki-experimental - Add experimental patches for improved MediaWiki support dev-vcs/git:ppcsha1 - Make use of a bundled routine that is optimized for the PPC arch |