sci-libs/clipper: Allow for compiling with GCC 6

Gentoo-bug: 585540
* EAPI=6

Package-Manager: portage-2.3.0

2 files changed, 65 insertions, 0 deletions

diff --git a/sci-libs/clipper/Manifest b/sci-libs/clipper/Manifest
index 5c2c008320ab..12a133160cb8 100644
--- a/sci-libs/clipper/Manifest
+++ b/sci-libs/clipper/Manifest
@@ -1 +1,2 @@
 DIST clipper-2.1.20140911.tar.gz 1922753 SHA256 ced2b2f3a9480805bd111f454742a7152b21212d9749fd5e8fb11e40ecbcd9cf SHA512 1306bd68d40ea6a7d828f58ce276d6f5d05637af8712eeec3528cf0e4b637263b8ab068ec132765fc4167723bf1d43cbb9ffe0eca43dea3742ec273f34947912 WHIRLPOOL cc867a96b8e4a7229a51131292f18db2e5a2398569734347f671078853e5b4a6470e426cbd5c8f49d38a65497270c08118ecf409bc0509bbca98c4df15fc0bc7
+DIST clipper-2.1.20140911_p20160914-fix-c++14.patch.bz2 10551 SHA256 88418a09ce28b8db003a2e561737fc7c29c2d800cc38e57bdeb5bad4d4f5fac4 SHA512 b18a059eb1bfaec18d1f6f104639001074d92b73768ab6ef412828fc21d891d93d15cd50cd41fca1187f4b4f90399e20bf3e6290af695c6bffbff2c85ca028eb WHIRLPOOL af027f9f0b5bed72bfa0875d4d6b7cd532ccc012d820fe14ba55b42b032a5a8c8738faf2f6c71266ea1e86669c5c004c65db374b8a0a04e99be7725a54f8420c
diff --git a/sci-libs/clipper/clipper-2.1.20140911-r1.ebuild b/sci-libs/clipper/clipper-2.1.20140911-r1.ebuild
new file mode 100644
index 000000000000..7ad50ccc03f0
--- /dev/null
+++ b/sci-libs/clipper/clipper-2.1.20140911-r1.ebuild
@@ -0,0 +1,64 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+
+inherit flag-o-matic fortran-2
+
+DESCRIPTION="Object-oriented libraries for crystallographic data and computation"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html"
+SRC_URI="ftp://ftp.ccp4.ac.uk/opensource/${P}.tar.gz
+	https://dev.gentoo.org/~soap/distfiles/${PN}-2.1.20140911_p20160914-fix-c++14.patch.bz2"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="fortran static-libs test"
+
+RDEPEND="
+	sci-libs/libccp4
+	sci-libs/fftw:2.1
+	sci-libs/mmdb:2"
+DEPEND="${RDEPEND}
+	test? ( app-shells/tcsh )"
+
+PATCHES=(
+	# fix building with GCC 6, #585540
+	"${WORKDIR}/${PN}-2.1.20140911_p20160914-fix-c++14.patch"
+)
+
+src_configure() {
+	# Recommended on ccp4bb/coot ML to fix crashes when calculating maps
+	# on 64-bit systems
+	append-flags -fno-strict-aliasing
+
+	econf \
+		--enable-shared \
+		$(use_enable static-libs static) \
+		$(use_enable fortran) \
+		--enable-ccp4 \
+		--enable-cif \
+		--enable-cns \
+		--enable-contrib \
+		--enable-minimol \
+		--enable-mmdb \
+		--enable-phs
+#		--enable-cctbx
+}
+
+src_test() {
+	emake -C examples check
+	cd examples || die
+	sed -e '/mtzdump/d' -i test.csh || die
+	PATH="${S}/examples:${PATH}" csh test.csh || die
+}
+
+src_install() {
+	default
+
+	# package provides .pc files
+	find "${D}" -name '*.la' -delete || die
+}