diff options
author | 2020-09-18 12:07:08 +0200 | |
---|---|---|
committer | 2020-09-18 12:08:06 +0200 | |
commit | 51a7be728639841f69b134f8acebeaa0fd3e4fe9 (patch) | |
tree | 15ae2cb3b1eb74c172093475792509c0168a6e0b /sci-libs | |
parent | app-eselect/eselect-python: amd64/arm64/arm/hppa/ppc64/ppc/s390/sparc/x86 sta... (diff) | |
download | gentoo-51a7be728639841f69b134f8acebeaa0fd3e4fe9.tar.gz gentoo-51a7be728639841f69b134f8acebeaa0fd3e4fe9.tar.bz2 gentoo-51a7be728639841f69b134f8acebeaa0fd3e4fe9.zip |
Move {sci-libs → dev-python}/scipy
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Diffstat (limited to 'sci-libs')
-rw-r--r-- | sci-libs/cartopy/cartopy-0.18.0.ebuild | 2 | ||||
-rw-r--r-- | sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild | 2 | ||||
-rw-r--r-- | sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild | 2 | ||||
-rw-r--r-- | sci-libs/numkit/numkit-1.1.2.ebuild | 2 | ||||
-rw-r--r-- | sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild | 2 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild | 4 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild | 4 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild | 4 | ||||
-rw-r--r-- | sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild | 2 | ||||
-rw-r--r-- | sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild | 2 | ||||
-rw-r--r-- | sci-libs/scipy/Manifest | 15 | ||||
-rw-r--r-- | sci-libs/scipy/metadata.xml | 27 | ||||
-rw-r--r-- | sci-libs/scipy/scipy-1.1.0.ebuild | 148 | ||||
-rw-r--r-- | sci-libs/scipy/scipy-1.4.1.ebuild | 154 | ||||
-rw-r--r-- | sci-libs/scipy/scipy-1.5.0.ebuild | 154 | ||||
-rw-r--r-- | sci-libs/scipy/scipy-1.5.1.ebuild | 154 | ||||
-rw-r--r-- | sci-libs/scipy/scipy-1.5.2.ebuild | 160 | ||||
-rw-r--r-- | sci-libs/shogun/shogun-5.0.0-r1.ebuild | 2 |
18 files changed, 14 insertions, 826 deletions
diff --git a/sci-libs/cartopy/cartopy-0.18.0.ebuild b/sci-libs/cartopy/cartopy-0.18.0.ebuild index 2fb1a4020f2f..bc9c5426b8f1 100644 --- a/sci-libs/cartopy/cartopy-0.18.0.ebuild +++ b/sci-libs/cartopy/cartopy-0.18.0.ebuild @@ -27,7 +27,7 @@ RDEPEND=" sci-libs/Shapely[${PYTHON_USEDEP}] dev-python/six[${PYTHON_USEDEP}] dev-python/matplotlib[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] dev-python/pillow[jpeg,${PYTHON_USEDEP}] sci-libs/gdal[python,${PYTHON_USEDEP}] " diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild index 58c165ae5018..c0bf90c60e2e 100644 --- a/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild +++ b/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild @@ -16,7 +16,7 @@ KEYWORDS="amd64 x86" IUSE="" RDEPEND="dev-python/numpy[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] dev-python/six[${PYTHON_USEDEP}]" DEPEND="${RDEPEND} dev-python/setuptools[${PYTHON_USEDEP}]" diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild index 58c165ae5018..c0bf90c60e2e 100644 --- a/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild +++ b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.0.ebuild @@ -16,7 +16,7 @@ KEYWORDS="amd64 x86" IUSE="" RDEPEND="dev-python/numpy[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] dev-python/six[${PYTHON_USEDEP}]" DEPEND="${RDEPEND} dev-python/setuptools[${PYTHON_USEDEP}]" diff --git a/sci-libs/numkit/numkit-1.1.2.ebuild b/sci-libs/numkit/numkit-1.1.2.ebuild index 8fb64e296e68..60e7576d3c8e 100644 --- a/sci-libs/numkit/numkit-1.1.2.ebuild +++ b/sci-libs/numkit/numkit-1.1.2.ebuild @@ -29,5 +29,5 @@ IUSE="" BDEPEND=" dev-python/six[${PYTHON_USEDEP}] >=dev-python/numpy-1.9[${PYTHON_USEDEP}] - >=sci-libs/scipy-1.0[${PYTHON_USEDEP}]" + >=dev-python/scipy-1.0[${PYTHON_USEDEP}]" RDEPEND="${DEPEND}" diff --git a/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild b/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild index 875c4e86fa4c..6764d75ad7cf 100644 --- a/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild +++ b/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild @@ -27,7 +27,7 @@ RDEPEND=" dev-python/pillow[${PYTHON_USEDEP}] dev-python/pywavelets[${PYTHON_USEDEP}] dev-python/six[${PYTHON_USEDEP}] - sci-libs/scipy[sparse,${PYTHON_USEDEP}] + dev-python/scipy[sparse,${PYTHON_USEDEP}] freeimage? ( media-libs/freeimage ) pyamg? ( dev-python/pyamg[${PYTHON_USEDEP}] )" DEPEND="${RDEPEND} diff --git a/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild index 467c21244943..87abf6b9c1e3 100644 --- a/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild +++ b/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild @@ -28,7 +28,7 @@ RDEPEND=" dev-python/nose[${PYTHON_USEDEP}] dev-python/numpy[lapack,${PYTHON_USEDEP}] sci-libs/scikits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] virtual/blas:= virtual/cblas:= " @@ -37,7 +37,7 @@ DEPEND=" dev-python/cython[${PYTHON_USEDEP}] dev-python/numpy[lapack,${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] virtual/blas:= virtual/cblas:= " diff --git a/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild b/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild index fc65c21b1d47..728231683290 100644 --- a/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild +++ b/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild @@ -29,7 +29,7 @@ RDEPEND=" dev-python/nose[${PYTHON_USEDEP}] dev-python/numpy[lapack,${PYTHON_USEDEP}] sci-libs/scikits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] virtual/blas:= virtual/cblas:= " @@ -38,7 +38,7 @@ DEPEND=" dev-python/cython[${PYTHON_USEDEP}] dev-python/numpy[lapack,${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] virtual/blas:= virtual/cblas:= " diff --git a/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild b/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild index fc65c21b1d47..728231683290 100644 --- a/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild +++ b/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild @@ -29,7 +29,7 @@ RDEPEND=" dev-python/nose[${PYTHON_USEDEP}] dev-python/numpy[lapack,${PYTHON_USEDEP}] sci-libs/scikits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] virtual/blas:= virtual/cblas:= " @@ -38,7 +38,7 @@ DEPEND=" dev-python/cython[${PYTHON_USEDEP}] dev-python/numpy[lapack,${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] virtual/blas:= virtual/cblas:= " diff --git a/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild index 1c4068d298ca..b60be666ce0d 100644 --- a/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild +++ b/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild @@ -25,7 +25,7 @@ RDEPEND=" dev-python/wheel[${PYTHON_USEDEP}] dev-python/cython[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] sci-libs/scikits[${PYTHON_USEDEP}] virtual/blas:= virtual/cblas:= diff --git a/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild b/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild index b1dd82b36296..0b7cea51568b 100644 --- a/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild +++ b/sci-libs/scikits_timeseries/scikits_timeseries-0.91.3-r2.ebuild @@ -25,7 +25,7 @@ DEPEND=" dev-python/numpy[${PYTHON_USEDEP}] doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )" RDEPEND=" - sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] sci-libs/scikits[${PYTHON_USEDEP}] dev-python/matplotlib[${PYTHON_USEDEP}] dev-python/pytables[${PYTHON_USEDEP}]" diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest deleted file mode 100644 index 9ed4593e3fc8..000000000000 --- a/sci-libs/scipy/Manifest +++ /dev/null @@ -1,15 +0,0 @@ -DIST scipy-1.1.0-html.zip 49851258 BLAKE2B 528df7ed8aa8e56662f436f31ee9e1d6d72d6fe962f9f0f6f84b7a2704b53009ce333b2102ec73bb7795110f8a61b18246aab95b1e21055f2b68c0ff2225b7bb SHA512 a03894a22a67c1359ee6206e9e1c9de1f926a7f829f5039f161e78df735708da09b0e51cdad3bf36bfede701d0bc5dc44f8cc0f249b6bfb80c9d8c9fe23aed46 -DIST scipy-1.1.0-ref.pdf 34360806 BLAKE2B f82807879d5d36d91d74e8983a0f4104bcb4b69cb7787fe5190f73fbbfcb8635a9399686b3c75736d3b0b5dd877b5280ff6fba728520e3b47c13ffc7835f8cd6 SHA512 c792064c986dffafa3c5d0741f30715028e655761d099f0fdd472270cf34642b367dfa2178ddceba13043a471e3aeb1db20d65308dbb40c704dab576aaadeb3e -DIST scipy-1.1.0.tar.gz 15583560 BLAKE2B 477753e622ee26a3bc8c2cb6829410152df84b29ce17a6d53a66348f5536f7993fedf5d32b782405b54b3af3feabf9bc91c381ed39546076849c2fdb71039404 SHA512 72fe32c6c009613cb78202598e5db14f8e630b3218839cfe18d43d40550d94cc5aa100c6f5d41f40e86ae148e9b6a13431bb91b0f9be44b0569ccd7b725fe973 -DIST scipy-1.4.1-html.zip 61414053 BLAKE2B e1f0c1a7a8941958512dcc3c0f40ef4a590bab0b44b33f842bc6e1c5d103c17f223d8b0a2f4e564f57645d601d4d74005c1ec605be2dd3bf4db19d2ac1f614d1 SHA512 9eeae83cd723d63aa1dc7a610ce3118cb68a2336be24cbfeaa8e57b34de413b2efa2fdad0978eb5bdac0ebca6b15f564b9509637efbd87d1007c969ae954e3ae -DIST scipy-1.4.1-ref.pdf 41100747 BLAKE2B 8e56af69d0bffbe6eff73bfc5bb674aed3b80bdd80d59b58a1835f996c992306a059c2992d74c411e762490c526262753d33273613ed389928845c65eb6546b2 SHA512 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lang="en"> - SciPy is an open source library of scientific tools for Python. SciPy - supplements the popular numpy module, gathering a variety of high level - science and engineering modules together as a single package. - SciPy includes modules for graphics and plotting, optimization, - integration, special functions, signal and image processing, genetic - algorithms, ODE solvers, and others. -</longdescription> - <use> - <flag name="sparse">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag> - </use> - <upstream> - <remote-id type="pypi">scipy</remote-id> - <remote-id type="sourceforge">scipy</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-libs/scipy/scipy-1.1.0.ebuild b/sci-libs/scipy/scipy-1.1.0.ebuild deleted file mode 100644 index 119210dc4f00..000000000000 --- a/sci-libs/scipy/scipy-1.1.0.ebuild +++ /dev/null @@ -1,148 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_{6,7} ) -PYTHON_REQ_USE="threads(+)" - -DOC_PV=${PV} - -inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs - -DESCRIPTION="Scientific algorithms library for Python" -HOMEPAGE="https://www.scipy.org/" -SRC_URI=" - mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz - doc? ( - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf - )" - -LICENSE="BSD LGPL-2" -SLOT="0" -IUSE="doc sparse test" -RESTRICT="!test? ( test )" -KEYWORDS="amd64 ~arm ~arm64 ppc ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos" - -CDEPEND=" - >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}] - sci-libs/arpack:0= - virtual/cblas - virtual/lapack - sparse? ( sci-libs/umfpack:0= )" -DEPEND="${CDEPEND} - dev-lang/swig - >=dev-python/cython-0.22[${PYTHON_USEDEP}] - >=dev-python/setuptools-36[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( app-arch/unzip ) - test? ( - dev-python/nose[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - )" -RDEPEND="${CDEPEND} - dev-python/pillow[${PYTHON_USEDEP}]" - -DOCS=( HACKING.rst.txt THANKS.txt ) - -DISTUTILS_IN_SOURCE_BUILD=1 - -src_unpack() { - default - if use doc; then - unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die - fi -} - -pc_incdir() { - $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ - sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libdir() { - $(tc-getPKG_CONFIG) --libs-only-L $@ | \ - sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libs() { - $(tc-getPKG_CONFIG) --libs-only-l $@ | \ - sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ - -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ - | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' -} - -python_prepare_all() { - # scipy automatically detects libraries by default - export {FFTW,FFTW3,UMFPACK}=None - use sparse && unset UMFPACK - # the missing symbols are in -lpythonX.Y, but since the version can - # differ, we just introduce the same scaryness as on Linux/ELF - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - [[ -z ${FC} ]] && export FC="$(tc-getFC)" - # hack to force F77 to be FC until bug #278772 is fixed - [[ -z ${F77} ]] && export F77="$(tc-getFC)" - export F90="${FC}" - export SCIPY_FCONFIG="config_fc --noopt --noarch" - append-fflags -fPIC - - local libdir="${EPREFIX}"/usr/$(get_libdir) - cat >> site.cfg <<-EOF || die - [blas] - include_dirs = $(pc_incdir cblas) - library_dirs = $(pc_libdir cblas blas):${libdir} - blas_libs = $(pc_libs cblas blas) - [lapack] - library_dirs = $(pc_libdir lapack):${libdir} - lapack_libs = $(pc_libs lapack) - EOF - - # Drop hashes to force rebuild of cython based .c code - rm cythonize.dat || die - - distutils-r1_python_prepare_all -} - -python_configure_all() { - # bug 721860 - test-flag-FC -fallow-argument-mismatch && - append-fflags -fallow-argument-mismatch -} - -python_compile() { - # FIXME: parallel python building fails, bug #614464 - ${EPYTHON} tools/cythonize.py || die - distutils-r1_python_compile \ - ${SCIPY_FCONFIG} -} - -python_test() { - # fails with bdist_egg. should it be fixed in distutils-r1 eclass? - distutils_install_for_testing ${SCIPY_FCONFIG} - cd "${TEST_DIR}" || die "no ${TEST_DIR} available" - "${PYTHON}" -c \ - 'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \ - || die - "${EPYTHON}" -c \ - "import scipy, sys; r = scipy.test('fast', verbose=2); sys.exit(r)" \ - || die "Tests fail with ${EPYTHON}" -} - -python_install_all() { - use doc && \ - local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \ - local HTML_DOCS=( "${WORKDIR}"/html/. ) - distutils-r1_python_install_all -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} -} - -pkg_postinst() { - elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" - elog "to your prefered image viewer. Example:" - elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" -} diff --git a/sci-libs/scipy/scipy-1.4.1.ebuild b/sci-libs/scipy/scipy-1.4.1.ebuild deleted file mode 100644 index 90fb741b4d73..000000000000 --- a/sci-libs/scipy/scipy-1.4.1.ebuild +++ /dev/null @@ -1,154 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_{6..9} ) -PYTHON_REQ_USE="threads(+)" - -DOC_PV=${PV} - -inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs - -DESCRIPTION="Scientific algorithms library for Python" -HOMEPAGE="https://www.scipy.org/" -SRC_URI=" - mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz - doc? ( - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf - )" - -LICENSE="BSD LGPL-2" -SLOT="0" -KEYWORDS="amd64 ~arm ~arm64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos" -IUSE="doc sparse test" -RESTRICT="!test? ( test )" - -CDEPEND=" - >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}] - sci-libs/arpack:0= - virtual/cblas - virtual/lapack - sparse? ( sci-libs/umfpack:0= )" -DEPEND="${CDEPEND} - dev-lang/swig - >=dev-python/cython-0.29.13[${PYTHON_USEDEP}] - >=dev-python/setuptools-36[${PYTHON_USEDEP}] - dev-python/pybind11[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( app-arch/unzip ) - test? ( - dev-python/nose[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - )" -RDEPEND="${CDEPEND} - dev-python/pillow[${PYTHON_USEDEP}]" - -DOCS=( HACKING.rst.txt THANKS.txt ) - -DISTUTILS_IN_SOURCE_BUILD=1 - -src_unpack() { - default - if use doc; then - unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die - fi -} - -pc_incdir() { - $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ - sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libdir() { - $(tc-getPKG_CONFIG) --libs-only-L $@ | \ - sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libs() { - $(tc-getPKG_CONFIG) --libs-only-l $@ | \ - sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ - -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ - | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' -} - -python_prepare_all() { - # scipy automatically detects libraries by default - export {FFTW,FFTW3,UMFPACK}=None - use sparse && unset UMFPACK - # the missing symbols are in -lpythonX.Y, but since the version can - # differ, we just introduce the same scaryness as on Linux/ELF - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - [[ -z ${FC} ]] && export FC="$(tc-getFC)" - # hack to force F77 to be FC until bug #278772 is fixed - [[ -z ${F77} ]] && export F77="$(tc-getFC)" - export F90="${FC}" - export SCIPY_FCONFIG="config_fc --noopt --noarch" - append-fflags -fPIC - - local libdir="${EPREFIX}"/usr/$(get_libdir) - cat >> site.cfg <<-EOF || die - [blas] - include_dirs = $(pc_incdir cblas) - library_dirs = $(pc_libdir cblas blas):${libdir} - blas_libs = $(pc_libs cblas blas) - [lapack] - library_dirs = $(pc_libdir lapack):${libdir} - lapack_libs = $(pc_libs lapack) - EOF - cat >> setup.cfg <<-EOF || die - [options] - zip_safe = False - EOF - - # Drop hashes to force rebuild of cython based .c code - rm cythonize.dat || die - - distutils-r1_python_prepare_all -} - -python_configure_all() { - # bug 721860 - test-flag-FC -fallow-argument-mismatch && - append-fflags -fallow-argument-mismatch -} - -python_compile() { - # FIXME: parallel python building fails, bug #614464 - export MAKEOPTS=-j1 - - ${EPYTHON} tools/cythonize.py || die - distutils-r1_python_compile \ - ${SCIPY_FCONFIG} -} - -python_test() { - # fails with bdist_egg. should it be fixed in distutils-r1 eclass? - distutils_install_for_testing ${SCIPY_FCONFIG} - cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available" - PYTHONPATH=. "${EPYTHON}" -c " -import scipy, sys -r = scipy.test('fast', verbose=2) -sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}" -} - -python_install_all() { - use doc && \ - local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \ - local HTML_DOCS=( "${WORKDIR}"/html/. ) - distutils-r1_python_install_all -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} - python_optimize -} - -pkg_postinst() { - elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" - elog "to your prefered image viewer. Example:" - elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" -} diff --git a/sci-libs/scipy/scipy-1.5.0.ebuild b/sci-libs/scipy/scipy-1.5.0.ebuild deleted file mode 100644 index 21948a8eb2c5..000000000000 --- a/sci-libs/scipy/scipy-1.5.0.ebuild +++ /dev/null @@ -1,154 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_{6..9} ) -PYTHON_REQ_USE="threads(+)" - -DOC_PV=${PV} - -inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs - -DESCRIPTION="Scientific algorithms library for Python" -HOMEPAGE="https://www.scipy.org/" -SRC_URI=" - mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz - doc? ( - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf - )" - -LICENSE="BSD LGPL-2" -SLOT="0" -KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos" -IUSE="doc sparse test" -RESTRICT="!test? ( test )" - -CDEPEND=" - >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}] - sci-libs/arpack:0= - virtual/cblas - virtual/lapack - sparse? ( sci-libs/umfpack:0= )" -DEPEND="${CDEPEND} - dev-lang/swig - >=dev-python/cython-0.29.13[${PYTHON_USEDEP}] - >=dev-python/setuptools-36[${PYTHON_USEDEP}] - dev-python/pybind11[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( app-arch/unzip ) - test? ( - dev-python/nose[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - )" -RDEPEND="${CDEPEND} - dev-python/pillow[${PYTHON_USEDEP}]" - -DOCS=( HACKING.rst.txt THANKS.txt ) - -DISTUTILS_IN_SOURCE_BUILD=1 - -src_unpack() { - default - if use doc; then - unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die - fi -} - -pc_incdir() { - $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ - sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libdir() { - $(tc-getPKG_CONFIG) --libs-only-L $@ | \ - sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libs() { - $(tc-getPKG_CONFIG) --libs-only-l $@ | \ - sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ - -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ - | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' -} - -python_prepare_all() { - # scipy automatically detects libraries by default - export {FFTW,FFTW3,UMFPACK}=None - use sparse && unset UMFPACK - # the missing symbols are in -lpythonX.Y, but since the version can - # differ, we just introduce the same scaryness as on Linux/ELF - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - [[ -z ${FC} ]] && export FC="$(tc-getFC)" - # hack to force F77 to be FC until bug #278772 is fixed - [[ -z ${F77} ]] && export F77="$(tc-getFC)" - export F90="${FC}" - export SCIPY_FCONFIG="config_fc --noopt --noarch" - append-fflags -fPIC - - local libdir="${EPREFIX}"/usr/$(get_libdir) - cat >> site.cfg <<-EOF || die - [blas] - include_dirs = $(pc_incdir cblas) - library_dirs = $(pc_libdir cblas blas):${libdir} - blas_libs = $(pc_libs cblas blas) - [lapack] - library_dirs = $(pc_libdir lapack):${libdir} - lapack_libs = $(pc_libs lapack) - EOF - cat >> setup.cfg <<-EOF || die - [options] - zip_safe = False - EOF - - # Drop hashes to force rebuild of cython based .c code - rm cythonize.dat || die - - distutils-r1_python_prepare_all -} - -python_configure_all() { - # bug 721860 - test-flag-FC -fallow-argument-mismatch && - append-fflags -fallow-argument-mismatch -} - -python_compile() { - # FIXME: parallel python building fails, bug #614464 - export MAKEOPTS=-j1 - - ${EPYTHON} tools/cythonize.py || die - distutils-r1_python_compile \ - ${SCIPY_FCONFIG} -} - -python_test() { - # fails with bdist_egg. should it be fixed in distutils-r1 eclass? - distutils_install_for_testing ${SCIPY_FCONFIG} - cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available" - PYTHONPATH=. "${EPYTHON}" -c " -import scipy, sys -r = scipy.test('fast', verbose=2) -sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}" -} - -python_install_all() { - use doc && \ - local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \ - local HTML_DOCS=( "${WORKDIR}"/html/. ) - distutils-r1_python_install_all -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} - python_optimize -} - -pkg_postinst() { - elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" - elog "to your prefered image viewer. Example:" - elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" -} diff --git a/sci-libs/scipy/scipy-1.5.1.ebuild b/sci-libs/scipy/scipy-1.5.1.ebuild deleted file mode 100644 index 21948a8eb2c5..000000000000 --- a/sci-libs/scipy/scipy-1.5.1.ebuild +++ /dev/null @@ -1,154 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_{6..9} ) -PYTHON_REQ_USE="threads(+)" - -DOC_PV=${PV} - -inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs - -DESCRIPTION="Scientific algorithms library for Python" -HOMEPAGE="https://www.scipy.org/" -SRC_URI=" - mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz - doc? ( - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf - )" - -LICENSE="BSD LGPL-2" -SLOT="0" -KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos" -IUSE="doc sparse test" -RESTRICT="!test? ( test )" - -CDEPEND=" - >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}] - sci-libs/arpack:0= - virtual/cblas - virtual/lapack - sparse? ( sci-libs/umfpack:0= )" -DEPEND="${CDEPEND} - dev-lang/swig - >=dev-python/cython-0.29.13[${PYTHON_USEDEP}] - >=dev-python/setuptools-36[${PYTHON_USEDEP}] - dev-python/pybind11[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( app-arch/unzip ) - test? ( - dev-python/nose[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - )" -RDEPEND="${CDEPEND} - dev-python/pillow[${PYTHON_USEDEP}]" - -DOCS=( HACKING.rst.txt THANKS.txt ) - -DISTUTILS_IN_SOURCE_BUILD=1 - -src_unpack() { - default - if use doc; then - unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die - fi -} - -pc_incdir() { - $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ - sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libdir() { - $(tc-getPKG_CONFIG) --libs-only-L $@ | \ - sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libs() { - $(tc-getPKG_CONFIG) --libs-only-l $@ | \ - sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ - -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ - | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' -} - -python_prepare_all() { - # scipy automatically detects libraries by default - export {FFTW,FFTW3,UMFPACK}=None - use sparse && unset UMFPACK - # the missing symbols are in -lpythonX.Y, but since the version can - # differ, we just introduce the same scaryness as on Linux/ELF - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - [[ -z ${FC} ]] && export FC="$(tc-getFC)" - # hack to force F77 to be FC until bug #278772 is fixed - [[ -z ${F77} ]] && export F77="$(tc-getFC)" - export F90="${FC}" - export SCIPY_FCONFIG="config_fc --noopt --noarch" - append-fflags -fPIC - - local libdir="${EPREFIX}"/usr/$(get_libdir) - cat >> site.cfg <<-EOF || die - [blas] - include_dirs = $(pc_incdir cblas) - library_dirs = $(pc_libdir cblas blas):${libdir} - blas_libs = $(pc_libs cblas blas) - [lapack] - library_dirs = $(pc_libdir lapack):${libdir} - lapack_libs = $(pc_libs lapack) - EOF - cat >> setup.cfg <<-EOF || die - [options] - zip_safe = False - EOF - - # Drop hashes to force rebuild of cython based .c code - rm cythonize.dat || die - - distutils-r1_python_prepare_all -} - -python_configure_all() { - # bug 721860 - test-flag-FC -fallow-argument-mismatch && - append-fflags -fallow-argument-mismatch -} - -python_compile() { - # FIXME: parallel python building fails, bug #614464 - export MAKEOPTS=-j1 - - ${EPYTHON} tools/cythonize.py || die - distutils-r1_python_compile \ - ${SCIPY_FCONFIG} -} - -python_test() { - # fails with bdist_egg. should it be fixed in distutils-r1 eclass? - distutils_install_for_testing ${SCIPY_FCONFIG} - cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available" - PYTHONPATH=. "${EPYTHON}" -c " -import scipy, sys -r = scipy.test('fast', verbose=2) -sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}" -} - -python_install_all() { - use doc && \ - local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \ - local HTML_DOCS=( "${WORKDIR}"/html/. ) - distutils-r1_python_install_all -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} - python_optimize -} - -pkg_postinst() { - elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" - elog "to your prefered image viewer. Example:" - elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" -} diff --git a/sci-libs/scipy/scipy-1.5.2.ebuild b/sci-libs/scipy/scipy-1.5.2.ebuild deleted file mode 100644 index 52f1cb13642f..000000000000 --- a/sci-libs/scipy/scipy-1.5.2.ebuild +++ /dev/null @@ -1,160 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_{6..9} ) -PYTHON_REQ_USE="threads(+)" - -DOC_PV=${PV} - -inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs - -DESCRIPTION="Scientific algorithms library for Python" -HOMEPAGE="https://www.scipy.org/" -SRC_URI=" - mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz - doc? ( - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip - https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf - )" - -LICENSE="BSD LGPL-2" -SLOT="0" -KEYWORDS="amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos" -IUSE="doc sparse test" -RESTRICT="!test? ( test )" - -CDEPEND=" - >=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}] - sci-libs/arpack:0= - virtual/cblas - virtual/lapack - sparse? ( sci-libs/umfpack:0= )" -DEPEND="${CDEPEND} - dev-lang/swig - >=dev-python/cython-0.29.13[${PYTHON_USEDEP}] - >=dev-python/setuptools-36[${PYTHON_USEDEP}] - dev-python/pybind11[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( app-arch/unzip ) - test? ( - dev-python/nose[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - )" -RDEPEND="${CDEPEND} - dev-python/pillow[${PYTHON_USEDEP}]" - -DOCS=( HACKING.rst.txt THANKS.txt ) - -DISTUTILS_IN_SOURCE_BUILD=1 - -src_unpack() { - default - if use doc; then - unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die - fi -} - -pc_incdir() { - $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ - sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libdir() { - $(tc-getPKG_CONFIG) --libs-only-L $@ | \ - sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libs() { - $(tc-getPKG_CONFIG) --libs-only-l $@ | \ - sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ - -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ - | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' -} - -python_prepare_all() { - # scipy automatically detects libraries by default - export {FFTW,FFTW3,UMFPACK}=None - use sparse && unset UMFPACK - # the missing symbols are in -lpythonX.Y, but since the version can - # differ, we just introduce the same scaryness as on Linux/ELF - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - [[ -z ${FC} ]] && export FC="$(tc-getFC)" - # hack to force F77 to be FC until bug #278772 is fixed - [[ -z ${F77} ]] && export F77="$(tc-getFC)" - export F90="${FC}" - export SCIPY_FCONFIG="config_fc --noopt --noarch" - append-fflags -fPIC - - local libdir="${EPREFIX}"/usr/$(get_libdir) - cat >> site.cfg <<-EOF || die - [blas] - include_dirs = $(pc_incdir cblas) - library_dirs = $(pc_libdir cblas blas):${libdir} - blas_libs = $(pc_libs cblas blas) - [lapack] - library_dirs = $(pc_libdir lapack):${libdir} - lapack_libs = $(pc_libs lapack) - EOF - cat >> setup.cfg <<-EOF || die - [options] - zip_safe = False - EOF - - # Drop hashes to force rebuild of cython based .c code - rm cythonize.dat || die - - # TODO - sed -e 's:test_magic_square_sparse_no_presolve:_&:' \ - -i scipy/optimize/tests/test_linprog.py || die - sed -e "s:== 'levy_stable':in ('levy_stable', 'crystalball', 'ncf'):" \ - -i scipy/stats/tests/test_continuous_basic.py || die - - distutils-r1_python_prepare_all -} - -python_configure_all() { - # bug 721860 - test-flag-FC -fallow-argument-mismatch && - append-fflags -fallow-argument-mismatch -} - -python_compile() { - # FIXME: parallel python building fails, bug #614464 - export MAKEOPTS=-j1 - - ${EPYTHON} tools/cythonize.py || die - distutils-r1_python_compile \ - ${SCIPY_FCONFIG} -} - -python_test() { - # fails with bdist_egg. should it be fixed in distutils-r1 eclass? - distutils_install_for_testing ${SCIPY_FCONFIG} - cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available" - PYTHONPATH=. "${EPYTHON}" -c " -import scipy, sys -r = scipy.test('fast', verbose=2) -sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}" -} - -python_install_all() { - use doc && \ - local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \ - local HTML_DOCS=( "${WORKDIR}"/html/. ) - distutils-r1_python_install_all -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} - python_optimize -} - -pkg_postinst() { - elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" - elog "to your prefered image viewer. Example:" - elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" -} diff --git a/sci-libs/shogun/shogun-5.0.0-r1.ebuild b/sci-libs/shogun/shogun-5.0.0-r1.ebuild index 1db83f206fad..d4e67145a5f1 100644 --- a/sci-libs/shogun/shogun-5.0.0-r1.ebuild +++ b/sci-libs/shogun/shogun-5.0.0-r1.ebuild @@ -72,7 +72,7 @@ DEPEND="${RDEPEND} python? ( >=dev-lang/swig-3.0.12 test? ( - sci-libs/scipy + dev-python/scipy ) ) R? ( >=dev-lang/swig-3.0.12 ) |