proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

6 files changed, 351 insertions, 0 deletions

diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
new file mode 100644
index 000000000000..53817b256160
--- /dev/null
+++ b/sci-libs/scipy/Manifest
@@ -0,0 +1,4 @@
+DIST scipy-0.15.1-html.zip 24956050 SHA256 c27d3656ffed1b988890cf192c692f646b00d02a0716122dcf447eff5f186cf2 SHA512 ec8c25d1a8da23a6794315a97177bf3bc1fbac331d562eb2ae6300575eafe040f3ff8d5a884dfe79d7e623313b7b474c095ddb090ce07007cba8fe9bf0fbab27 WHIRLPOOL f4a0a55c209ab3806cf97af74d2948c3f4461d3bdccb36ab1a219a1bcba11c95e1c90f216b36680d161ad24966cbda22356340195f0c13ce23bcafc60a72a279
+DIST scipy-0.15.1-ref.pdf 18313446 SHA256 d96046ddbc91383fb37e3ae2bbdc6945e0c2fc70fa230e0bcda0789e6025ca7e SHA512 9ca6a656e454058273f5153d84acbca42f4ea9b99d0dbfde4a019cbb3ef7e87c4068660bc787506ca749024d45efaea7254614486d56b114c762fc8a69c3b496 WHIRLPOOL b907a6011671b0e0919d48b3e4587fd09cad3f2b463a302e1c9be22facec5f2d599b1eb9497a0cf1e3a0125b3beda0b1e00e7ca2cd40453c49a2df368b9c794e
+DIST scipy-0.15.1.tar.gz 11401878 SHA256 a212cbc3b79e9a563aa45fc5c517b3499198bd7eb7e7be1e047568a5f48c259a SHA512 fff4412d850c431a1b4e6ee3b17958ee5ab3beb81e6cb8a8e7d56d368751eaa8781d7c3e69d932dc002d718fddc66a72098acfe74cfe29ec80b24e6736317275 WHIRLPOOL 31f2f6ca33be1945bedf41f84cf62831c9b22f4d7079d2b0b7b21706b17eb4ab5f3a948be645bcb86a35f3a714e4f277bd66261d02d20d8aeb5077b2095c952f
+DIST scipy-0.16.0.tar.gz 18137295 SHA256 92592f40097098f3fdbe7f5855d535b29bb16719c2bb59c728bce5e7a28790e0 SHA512 943f21a2798db124b7e1fb9257064b725702cc6656a90ae10dda285c36166c378304c7d44a571b5ab4ef6819e995ea42e947417e16b2a665dd6db4a460adbd89 WHIRLPOOL ba99d1ea46522814e9181c8991cede8b8a8f4a00b39d3fffc5fa570a52d4ef57044e9af4bb37ea24e733ec6af226e2787a4e88360c53d7bd67a505446725c62f
diff --git a/sci-libs/scipy/files/scipy-0.12.0-blitz.patch b/sci-libs/scipy/files/scipy-0.12.0-blitz.patch
new file mode 100644
index 000000000000..2817aa39b871
--- /dev/null
+++ b/sci-libs/scipy/files/scipy-0.12.0-blitz.patch
@@ -0,0 +1,28 @@
+Description: Fixes scipy.weave.inline compalition with g++ 4.3 and upwards
+Author: Sameer Morar <smorar@gmail.com>
+Forwarded: http://projects.scipy.org/scipy/scipy/ticket/739
+Bug-Debian: http://bugs.debian.org/598520
+Bug-Ubuntu: https://launchpad.net/bugs/302649
+
+--- a/scipy/weave/blitz/blitz/blitz.h
++++ b/scipy/weave/blitz/blitz/blitz.h
+@@ -65,6 +65,8 @@
+ 
+ #define BZ_THROW                     // Needed in <blitz/numinquire.h>
+ 
++#include <cstdlib>
++
+ BZ_NAMESPACE(blitz)
+ 
+ #ifdef BZ_HAVE_STD
+--- a/scipy/weave/blitz/blitz/prettyprint.h
++++ b/scipy/weave/blitz/blitz/prettyprint.h
+@@ -22,6 +22,8 @@
+ #ifndef BZ_PRETTYPRINT_H
+ #define BZ_PRETTYPRINT_H
+ 
++#include <cstdlib>
++
+ BZ_NAMESPACE(blitz)
+ 
+ class prettyPrintFormat {
diff --git a/sci-libs/scipy/files/scipy-0.12.0-restore-sys-argv.patch b/sci-libs/scipy/files/scipy-0.12.0-restore-sys-argv.patch
new file mode 100644
index 000000000000..3eef739f93a8
--- /dev/null
+++ b/sci-libs/scipy/files/scipy-0.12.0-restore-sys-argv.patch
@@ -0,0 +1,15 @@
+Description: restore sys.argv in case of exception
+Bug-Debian: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=500814
+
+--- a/scipy/weave/build_tools.py
++++ b/scipy/weave/build_tools.py
+@@ -283,6 +283,9 @@ def build_extension(module_path,compiler
+         configure_python_path(build_dir)
+     except SyntaxError: #TypeError:
+         success = 0
++    except Exception, e:
++        restore_sys_argv()
++        raise e
+ 
+     # restore argv after our trick...
+     restore_sys_argv()
diff --git a/sci-libs/scipy/metadata.xml b/sci-libs/scipy/metadata.xml
new file mode 100644
index 000000000000..7d6606f0d5e3
--- /dev/null
+++ b/sci-libs/scipy/metadata.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <longdescription lang="en">
+  SciPy is an open source library of scientific tools for Python. SciPy
+  supplements the popular numpy module, gathering a variety of high level
+  science and engineering modules together as a single package.
+  SciPy includes modules for graphics and plotting, optimization,
+  integration, special functions, signal and image processing, genetic
+  algorithms, ODE solvers, and others.
+</longdescription>
+  <use>
+    <flag name="sparse">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
+  </use>
+  <upstream>
+    <remote-id type="pypi">scipy</remote-id>
+    <remote-id type="sourceforge">scipy</remote-id>
+  </upstream>
+</pkgmetadata>
diff --git a/sci-libs/scipy/scipy-0.15.1.ebuild b/sci-libs/scipy/scipy-0.15.1.ebuild
new file mode 100644
index 000000000000..4ff3d432a8b7
--- /dev/null
+++ b/sci-libs/scipy/scipy-0.15.1.ebuild
@@ -0,0 +1,141 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{3,4} )
+
+DOC_PV=0.15.1
+
+inherit eutils fortran-2 distutils-r1 flag-o-matic multilib toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="http://www.scipy.org/"
+SRC_URI="
+	mirror://sourceforge/${PN}/${P}.tar.gz
+	doc? (
+		http://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
+		http://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
+	)"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc sparse test"
+KEYWORDS="amd64 ~arm ppc ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+
+CDEPEND="
+	dev-python/numpy[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:0=
+	virtual/cblas
+	virtual/lapack
+	sparse? ( sci-libs/umfpack:0= )"
+DEPEND="${CDEPEND}
+	dev-lang/swig
+	>=dev-python/cython-0.19.1[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	test? (	dev-python/nose[${PYTHON_USEDEP}] )
+	"
+
+RDEPEND="${CDEPEND}
+	virtual/python-imaging[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt THANKS.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+	unpack ${P}.tar.gz
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+	# scipy automatically detects libraries by default
+	export {FFTW,FFTW3,UMFPACK}=None
+	use sparse && unset UMFPACK
+	# the missing symbols are in -lpythonX.Y, but since the version can
+	# differ, we just introduce the same scaryness as on Linux/ELF
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
+	# hack to force F77 to be FC until bug #278772 is fixed
+	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
+	export F90="${FC}"
+	export SCIPY_FCONFIG="config_fc --noopt --noarch"
+	append-fflags -fPIC
+
+	local libdir="${EPREFIX}"/usr/$(get_libdir)
+	cat >> site.cfg <<-EOF
+		[blas]
+		include_dirs = $(pc_incdir cblas)
+		library_dirs = $(pc_libdir cblas blas):${libdir}
+		blas_libs = $(pc_libs cblas blas)
+		[lapack]
+		library_dirs = $(pc_libdir lapack):${libdir}
+		lapack_libs = $(pc_libs lapack)
+	EOF
+
+	# Drop hashes to force rebuild of cython based .c code
+	rm cythonize.dat || die
+
+	local PATCHES=(
+		"${FILESDIR}"/${PN}-0.12.0-blitz.patch
+		"${FILESDIR}"/${PN}-0.12.0-restore-sys-argv.patch
+	)
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	${EPYTHON} tools/cythonize.py || die
+	distutils-r1_python_compile ${SCIPY_FCONFIG}
+}
+
+python_test() {
+	# fails with bdist_egg. should it be fixed in distutils-r1 eclass?
+	distutils_install_for_testing ${SCIPY_FCONFIG}
+	cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
+	"${EPYTHON}" -c "
+import scipy, sys
+r = scipy.test('fast',verbose=2)
+sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+	if use doc; then
+		dodoc "${DISTDIR}"/${PN}*pdf
+		docinto html
+		dodoc -r "${WORKDIR}"/html/.
+	fi
+	distutils-r1_python_install_all
+}
+
+python_install() {
+	distutils-r1_python_install ${SCIPY_FCONFIG}
+}
+
+pkg_postinst() {
+	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+	elog "to your prefered image viewer. Example:"
+	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}
diff --git a/sci-libs/scipy/scipy-0.16.0.ebuild b/sci-libs/scipy/scipy-0.16.0.ebuild
new file mode 100644
index 000000000000..a41fb526534c
--- /dev/null
+++ b/sci-libs/scipy/scipy-0.16.0.ebuild
@@ -0,0 +1,143 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{3,4} )
+
+DOC_PV=0.15.1
+
+inherit eutils fortran-2 distutils-r1 flag-o-matic multilib toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="http://www.scipy.org/"
+SRC_URI="
+	mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
+	doc? (
+		http://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
+		http://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
+	)"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc sparse test"
+KEYWORDS="~amd64 ~arm ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+
+CDEPEND="
+	>=dev-python/numpy-1.6.2[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:0=
+	virtual/cblas
+	virtual/lapack
+	sparse? ( sci-libs/umfpack:0= )"
+DEPEND="${CDEPEND}
+	dev-lang/swig
+	>=dev-python/cython-0.22[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	test? (	dev-python/nose[${PYTHON_USEDEP}] )
+	"
+
+RDEPEND="${CDEPEND}
+	virtual/python-imaging[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt THANKS.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+	unpack ${P}.tar.gz
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+	# scipy automatically detects libraries by default
+	export {FFTW,FFTW3,UMFPACK}=None
+	use sparse && unset UMFPACK
+	# the missing symbols are in -lpythonX.Y, but since the version can
+	# differ, we just introduce the same scaryness as on Linux/ELF
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
+	# hack to force F77 to be FC until bug #278772 is fixed
+	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
+	export F90="${FC}"
+	export SCIPY_FCONFIG="config_fc --noopt --noarch"
+	append-fflags -fPIC
+
+	local libdir="${EPREFIX}"/usr/$(get_libdir)
+	cat >> site.cfg <<-EOF
+		[blas]
+		include_dirs = $(pc_incdir cblas)
+		library_dirs = $(pc_libdir cblas blas):${libdir}
+		blas_libs = $(pc_libs cblas blas)
+		[lapack]
+		library_dirs = $(pc_libdir lapack):${libdir}
+		lapack_libs = $(pc_libs lapack)
+	EOF
+
+	# Drop hashes to force rebuild of cython based .c code
+	rm cythonize.dat || die
+
+	local PATCHES=(
+		"${FILESDIR}"/${PN}-0.12.0-blitz.patch
+		"${FILESDIR}"/${PN}-0.12.0-restore-sys-argv.patch
+	)
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	${EPYTHON} tools/cythonize.py || die
+	distutils-r1_python_compile ${SCIPY_FCONFIG}
+}
+
+python_test() {
+	# fails with bdist_egg. should it be fixed in distutils-r1 eclass?
+	distutils_install_for_testing ${SCIPY_FCONFIG}
+	cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
+	"${PYTHON}" -c \
+		'import numpy as np; print("relaxed strides checking:", np.ones((10,1),order="C").flags.f_contiguous)' \
+		|| die
+	"${EPYTHON}" -c \
+		"import scipy, sys; r = scipy.test('fast',verbose=2); sys.exit(0 if r.wasSuccessful() else 1)" \
+		|| die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+	if use doc; then
+		dodoc "${DISTDIR}"/${PN}*pdf
+		docinto html
+		dodoc -r "${WORKDIR}"/html/.
+	fi
+	distutils-r1_python_install_all
+}
+
+python_install() {
+	distutils-r1_python_install ${SCIPY_FCONFIG}
+}
+
+pkg_postinst() {
+	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+	elog "to your prefered image viewer. Example:"
+	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}