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author | David Seifert <soap@gentoo.org> | 2022-12-27 01:06:46 +0100 |
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committer | David Seifert <soap@gentoo.org> | 2022-12-27 01:06:46 +0100 |
commit | 01090e63f3067303d6ca41e5bbea8b890bbab7b6 (patch) | |
tree | b75022a532f4391aa0f1b7fe020797156e14da4b /sci-biology | |
parent | sci-biology/samtools: add 1.16.1 (diff) | |
download | gentoo-01090e63f3067303d6ca41e5bbea8b890bbab7b6.tar.gz gentoo-01090e63f3067303d6ca41e5bbea8b890bbab7b6.tar.bz2 gentoo-01090e63f3067303d6ca41e5bbea8b890bbab7b6.zip |
sci-biology/bcftools: add 1.16
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/bcftools/Manifest | 1 | ||||
-rw-r--r-- | sci-biology/bcftools/bcftools-1.16.ebuild | 42 |
2 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 4dbacdb4a399..af5f3f40dd8b 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1 +1,2 @@ DIST bcftools-1.15.1.tar.bz2 6917252 BLAKE2B d2389df8d2a1bbc48fcaccad47d77ff99d700e82e04330189e7d93acdac97a13506c2b799fbba31bdc0988977c7df7c699e7b156f3530dd35e5f052c6f977731 SHA512 60fedacc41051675d372e68146ac8fa0dc019a7fb694fda487d89e62f34edaf5ac11cca38779e9bcfcf8b3148802fadabed12f7e46ad534ad5087b8d6383f97b +DIST bcftools-1.16.tar.bz2 7325862 BLAKE2B 0e1240448d4efb352d3d0cd83decd286f7544fff3676f0a5cca51dec9c445c47c37ac24a3317aa7b41182c576e7e57dba460fc98aca069dc2f8fe0625c0b0f06 SHA512 998d5ac941f73798c35dd1db7ac7aba9067f275bd3055728aabfd8edd9f40484130df1fb57621d1a762a57b28ffcac358570915c341d420ae6f12bd17f7651a3 diff --git a/sci-biology/bcftools/bcftools-1.16.ebuild b/sci-biology/bcftools/bcftools-1.16.ebuild new file mode 100644 index 000000000000..eeb9a7c890b7 --- /dev/null +++ b/sci-biology/bcftools/bcftools-1.16.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{8..11} ) + +inherit python-single-r1 + +DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" +HOMEPAGE="http://www.htslib.org" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + dev-lang/perl + $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]') + =sci-libs/htslib-$(ver_cut 1-2)*:= + sys-libs/zlib + ${PYTHON_DEPS}" +DEPEND="${RDEPEND}" +BDEPEND="${PYTHON_DEPS}" + +src_prepare() { + default + + python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --disable-bcftools-plugins \ + --disable-libgsl \ + --with-htslib=system +} |