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authorRepository mirror & CI <repomirrorci@gentoo.org>2022-06-22 04:19:19 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2022-06-22 04:19:19 +0000
commitf0ac76089f7c8124e00a25ac13aaa2dd27ae8cc4 (patch)
treedc94d01a44387e8a87eefda48f55aea3fdb2be00 /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
downloadgentoo-f0ac76089f7c8124e00a25ac13aaa2dd27ae8cc4.tar.gz
gentoo-f0ac76089f7c8124e00a25ac13aaa2dd27ae8cc4.tar.bz2
gentoo-f0ac76089f7c8124e00a25ac13aaa2dd27ae8cc4.zip
2022-06-22 04:19:18 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-2.5.24
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-99994
-rw-r--r--metadata/md5-cache/sci-biology/express-1.5.14
-rw-r--r--metadata/md5-cache/sci-biology/fasttree-2.1.114
-rw-r--r--metadata/md5-cache/sci-biology/kallisto-0.46.24
-rw-r--r--metadata/md5-cache/sci-biology/seqan-2.4.0-r14
-rw-r--r--metadata/md5-cache/sci-biology/seqan-3.1.04
-rw-r--r--metadata/md5-cache/sci-biology/uchime-4.2.404
8 files changed, 16 insertions, 16 deletions
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2
index 7c85fbcedcc2..2ebfd3ba3924 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.2
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.20.5
+BDEPEND=virtual/pkgconfig >=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
@@ -10,5 +10,5 @@ LICENSE=MIT
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/2.5.2
SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d
_md5_=efdfbdbf4181a018ee9965d5c16be71f
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index 04d00eeebea4..c9a894d9be11 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.20.5 >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=virtual/pkgconfig >=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5 >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install prepare test unpack
DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
@@ -9,5 +9,5 @@ LICENSE=MIT
PROPERTIES=live
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/9999
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0 git-r3 b9ac6f96d2a88edb5b351df634dc5e53
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d git-r3 b9ac6f96d2a88edb5b351df634dc5e53
_md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index 92758f956170..f224d8c4bf05 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
+BDEPEND=>=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
DESCRIPTION=Streaming RNA-Seq Analysis
@@ -10,5 +10,5 @@ LICENSE=Artistic
RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
SLOT=0
SRC_URI=https://pachterlab.github.io/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d
_md5_=b4fcbc714ea460615318f4baa4bc347a
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11
index 9bcc0f7004e0..a7b8eb6a4f46 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.11
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
+BDEPEND=>=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test unpack
DESCRIPTION=Fast inference of approximately-maximum-likelihood phylogenetic trees
EAPI=7
@@ -10,5 +10,5 @@ LICENSE=GPL-2
REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
SLOT=0
SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d
_md5_=4a94b8db43f0aadb5ece67757ccbe635
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2 b/metadata/md5-cache/sci-biology/kallisto-0.46.2
index 74a20eb049d5..3f7a170b6395 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.46.2
+++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.20.5
+BDEPEND=virtual/pkgconfig >=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= ) test? ( dev-cpp/catch:0 sci-libs/hdf5 )
DESCRIPTION=Near-optimal RNA-Seq quantification
@@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d
_md5_=1b739cad0275e6dc5a320723611b78e9
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
index dd74fb703be0..867080bbbda5 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
+BDEPEND=>=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare pretend setup test
DEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2
DESCRIPTION=C++ Sequence Analysis Library
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seq
REQUIRED_USE=cpu_flags_x86_sse4_1
SLOT=0
SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0 multibuild d26d81f242cb193d899a72bca423d0bd
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d multibuild d26d81f242cb193d899a72bca423d0bd
_md5_=af3f619bf918af3c15697066b1de20bb
diff --git a/metadata/md5-cache/sci-biology/seqan-3.1.0 b/metadata/md5-cache/sci-biology/seqan-3.1.0
index ac8dbb141f3d..1c612e789340 100644
--- a/metadata/md5-cache/sci-biology/seqan-3.1.0
+++ b/metadata/md5-cache/sci-biology/seqan-3.1.0
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
+BDEPEND=>=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-libs/zlib:=
DESCRIPTION=C++ Sequence Analysis Library
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= dev-cpp/range-v3 dev-libs/cereal sci-libs/lemon sys-lib
REQUIRED_USE=cpu_flags_x86_sse4_2
SLOT=0
SRC_URI=https://github.com/seqan/seqan3/releases/download/3.1.0/seqan3-3.1.0-Source.tar.xz
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d
_md5_=327a33751512d78b13d5acd641ba3385
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index b2da829ba630..94b2a257f613 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
+BDEPEND=>=dev-util/ninja-1.8.2 >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=Fast, accurate chimera detection
EAPI=7
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
LICENSE=public-domain
SLOT=0
SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 90e2b29417d53718328f3a95227137a0
+_eclasses_=toolchain-funcs fd9cde67030b26e479eeadaced488253 multilib 4fbbbc98f236f1b43acd99476bc3cd85 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4a1902f969e5718126434fc35f3a0d9c eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic a500d7cc40da3de38c361e889153bdf7 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 58ec4e54962bf45d065fb95030701514 xdg-utils fffb53a53cf17c9c0c998a3c0a590c7e cmake 44afbf15c35884f7c840470f1cf05d0d
_md5_=421c75fd545cd9d38575321e00aeab36