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authorRepository QA checks <repo-qa-checks@gentoo.org>2017-03-11 23:24:15 +0000
committerRepository QA checks <repo-qa-checks@gentoo.org>2017-03-11 23:24:15 +0000
commitcba0c348efaeffe577c3a54b6f8bf1b4457cceee (patch)
tree98de6d549487fd18d68cf3886830af059bacfdb7 /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
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2017-03-11 23:24:13 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/amap-2.2-r32
-rw-r--r--metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r12
-rw-r--r--metadata/md5-cache/sci-biology/beast-mcmc-99992
-rw-r--r--metadata/md5-cache/sci-biology/gatk-2.42
-rw-r--r--metadata/md5-cache/sci-biology/gatk-99992
-rw-r--r--metadata/md5-cache/sci-biology/goby-1.9.7.3-r12
-rw-r--r--metadata/md5-cache/sci-biology/goby-1.9.8.1-r12
-rw-r--r--metadata/md5-cache/sci-biology/picard-1.1032
8 files changed, 8 insertions, 8 deletions
diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3
index 9cf1e983deae..c631fac46f25 100644
--- a/metadata/md5-cache/sci-biology/amap-2.2-r3
+++ b/metadata/md5-cache/sci-biology/amap-2.2-r3
@@ -10,5 +10,5 @@ RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 )
SLOT=0
SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz
_eclass_exported_funcs=pkg_preinst:java-pkg-opt-2 pkg_setup:java-pkg-opt-2 src_prepare:- src_configure:java-ant-2 src_compile:- src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-opt-2 be255db325e3af8fbf3506cf63998341 java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-opt-2 be255db325e3af8fbf3506cf63998341 java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=6bd792e8b76c06ee993b88f83e48b907
diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
index fa7ee89f0e09..f4e0d831384c 100644
--- a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
+++ b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-j
SLOT=0
SRC_URI=https://dev.gentoo.org/~jlec/distfiles/beast-mcmc-1.7.5.tar.xz
_eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:- src_test:- src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=ff6d5ad394902a1137f7b3a310e2da17
diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-9999 b/metadata/md5-cache/sci-biology/beast-mcmc-9999
index 9502696ffe9d..146ef8676877 100644
--- a/metadata/md5-cache/sci-biology/beast-mcmc-9999
+++ b/metadata/md5-cache/sci-biology/beast-mcmc-9999
@@ -8,5 +8,5 @@ LICENSE=LGPL-3
RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3
SLOT=0
_eclass_exported_funcs=pkg_preinst:subversion pkg_setup:java-pkg-2 src_unpack:subversion src_prepare:- src_configure:java-ant-2 src_compile:- src_test:- src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 subversion a5d5826a85609611f098c0553eb24cc1 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 subversion a5d5826a85609611f098c0553eb24cc1 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=8ad11964919894b7a04467aea903b1c3
diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4
index b6cf47ce7d1b..5272416b29ed 100644
--- a/metadata/md5-cache/sci-biology/gatk-2.4
+++ b/metadata/md5-cache/sci-biology/gatk-2.4
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3
SLOT=0
SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz
_eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_unpack:vcs-snapshot src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee vcs-snapshot 03289f51c769cf409d200d2d628cdd6e versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee vcs-snapshot 03289f51c769cf409d200d2d628cdd6e versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=8afea474ed6c1f4ad5ac6d6a18c49542
diff --git a/metadata/md5-cache/sci-biology/gatk-9999 b/metadata/md5-cache/sci-biology/gatk-9999
index 05a8c186cd4f..80dcea9de3b3 100644
--- a/metadata/md5-cache/sci-biology/gatk-9999
+++ b/metadata/md5-cache/sci-biology/gatk-9999
@@ -8,5 +8,5 @@ LICENSE=MIT
RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3
SLOT=0
_eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_unpack:git-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c git-2 195a672bfaf52d868442171c9469bbb6 java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c git-2 195a672bfaf52d868442171c9469bbb6 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=df4fa840e567320d0f100f0073200f23
diff --git a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1
index 102b6ed7b3de..5a5f3809df84 100644
--- a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1
+++ b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev
SLOT=0
SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-deps.zip
_eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=03afdad422e8ac673016b7bbfd574c75
diff --git a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1
index 530d258eca99..7934df8461f7 100644
--- a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1
+++ b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev
SLOT=0
SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-deps.zip
_eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:- src_configure:java-ant-2 src_compile:java-pkg-2 src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=5d560004d41472d184dd71e7ea06a04c
diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103
index 525dcc0503d0..cc8376d4cea3 100644
--- a/metadata/md5-cache/sci-biology/picard-1.103
+++ b/metadata/md5-cache/sci-biology/picard-1.103
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons
SLOT=0
SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2
_eclass_exported_funcs=pkg_preinst:java-pkg-2 pkg_setup:java-pkg-2 src_prepare:java-pkg-2 src_configure:java-ant-2 src_compile:java-pkg-2 src_test:- src_install:-
-_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 799c0d56dcbae3a3339f5a6b7585d5d6 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=eutils 3c847a0129fed780bd709b98e426f89c java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 1971a6927fcd7ec839f7e12b28a24bdd multilib 0236be304ee52e7f179ed2f337075515 toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=09627e6bb74ee9997324bde01a56bcbd