2017-02-19 19:02:58 UTC

48 files changed, 287 insertions, 301 deletions

diff --git a/metadata/md5-cache/sci-biology/aaindex-9.1 b/metadata/md5-cache/sci-biology/aaindex-9.1
index 715238259c93..305211f08501 100644
--- a/metadata/md5-cache/sci-biology/aaindex-9.1
+++ b/metadata/md5-cache/sci-biology/aaindex-9.1
@@ -4,10 +4,10 @@ DESCRIPTION=Amino acid indices and similarity matrices
 EAPI=0
 HOMEPAGE=http://www.genome.ad.jp/aaindex
 IUSE=emboss minimal
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/aaindex-9.1.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=a0ae0066224c63807c6b983a13f12686
+_md5_=22faad20c144b0538946b11027aadf7b
diff --git a/metadata/md5-cache/sci-biology/cutg-160-r1 b/metadata/md5-cache/sci-biology/cutg-160-r1
index a8dfaf992bc3..070e38f077a4 100644
--- a/metadata/md5-cache/sci-biology/cutg-160-r1
+++ b/metadata/md5-cache/sci-biology/cutg-160-r1
@@ -4,11 +4,11 @@ DESCRIPTION=Codon usage tables calculated from GenBank
 EAPI=5
 HOMEPAGE=http://www.kazusa.or.jp/codon/
 IUSE=emboss minimal
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 RDEPEND=emboss? ( sci-biology/emboss )
 RESTRICT=binchecks strip
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/cutg-160.tar.xz
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=401c5574e0d6dc09f68f29f5f5d52e08
+_md5_=84128d2fa1f9689d4b8519b665fa4a49
diff --git a/metadata/md5-cache/sci-biology/embassy-6.6.0 b/metadata/md5-cache/sci-biology/embassy-6.6.0
deleted file mode 100644
index 799106987754..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-6.6.0
+++ /dev/null
@@ -1,10 +0,0 @@
-DEFINED_PHASES=-
-DESCRIPTION=A meta-package for installing all EMBASSY packages (EMBOSS add-ons)
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/embassy/
-KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos
-LICENSE=freedist
-RDEPEND=>=sci-biology/embassy-cbstools-1.0.0.650 >=sci-biology/embassy-clustalomega-1.1.0 >=sci-biology/embassy-domainatrix-0.1.650 >=sci-biology/embassy-domalign-0.1.650 >=sci-biology/embassy-domsearch-0.1.650 >=sci-biology/embassy-emnu-1.05.650 >=sci-biology/embassy-esim4-1.0.0.650 >=sci-biology/embassy-hmmer-2.3.2.650 >=sci-biology/embassy-iprscan-4.3.1.650 >=sci-biology/embassy-meme-4.7.650 >=sci-biology/embassy-mse-3.0.0.650 >=sci-biology/embassy-phylipnew-3.69.650 >=sci-biology/embassy-signature-0.1.650 >=sci-biology/embassy-structure-0.1.650 >=sci-biology/embassy-topo-2.0.650 >=sci-biology/embassy-vienna-1.7.2.650
-SLOT=0
-_eclass_exported_funcs=-
-_md5_=d816608e82acbfc4dde275f13af65181
diff --git a/metadata/md5-cache/sci-biology/embassy-6.6.0-r1 b/metadata/md5-cache/sci-biology/embassy-6.6.0-r1
new file mode 100644
index 000000000000..c833c07be1f8
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-6.6.0-r1
@@ -0,0 +1,10 @@
+DEFINED_PHASES=-
+DESCRIPTION=A meta-package for installing all EMBASSY packages (EMBOSS add-ons)
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/embassy/
+KEYWORDS=~amd64 ~x86 ~x86-linux
+LICENSE=freedist
+RDEPEND=>=sci-biology/embassy-cbstools-1.0.0.660 >=sci-biology/embassy-clustalomega-1.1.0.660 >=sci-biology/embassy-domainatrix-0.1.660 >=sci-biology/embassy-domalign-0.1.660 >=sci-biology/embassy-domsearch-0.1.660 >=sci-biology/embassy-emnu-1.05.660 >=sci-biology/embassy-esim4-1.0.0.660 >=sci-biology/embassy-hmmer-2.3.2.660 >=sci-biology/embassy-iprscan-4.3.1.660 >=sci-biology/embassy-meme-4.7.660 >=sci-biology/embassy-mse-3.0.0.660 >=sci-biology/embassy-phylipnew-3.69.660 >=sci-biology/embassy-signature-0.1.660 >=sci-biology/embassy-structure-0.1.660 >=sci-biology/embassy-topo-2.0.660 >=sci-biology/embassy-vienna-1.7.2.660
+SLOT=0
+_eclass_exported_funcs=-
+_md5_=9e5ef3ddd5099588fa8f7f28ff3766c7
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.650 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.650
deleted file mode 100644
index eb867b9da000..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.650
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of Applications from the CBS group
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2
-RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz -> embassy-cbstools-1.0.0.650.tar.gz
-_eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	emboss-r1	4845d0df55fa82758c20d0fb0ef1a2a2	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=6eae9394bd91919f0c54ba878b45d282
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
new file mode 100644
index 000000000000..83f4a8201ec7
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DESCRIPTION=EMBOSS integrated version of Applications from the CBS group
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=mysql pdf png postgres static-libs X
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=LGPL-2 GPL-2
+RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
+_eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=36633f4f8ab0d60b36da3d315ae909cc
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0
deleted file mode 100644
index 719f3709376c..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of Clustal Omega - Scalable multiple protein sequences alignment
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2
-RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.tar.gz -> embassy-clustalomega-1.1.0.tar.gz
-_eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	emboss-r1	4845d0df55fa82758c20d0fb0ef1a2a2	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=78d217460299d444dd47ef25eccc6780
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
new file mode 100644
index 000000000000..51136266e5dd
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=mysql pdf png postgres static-libs X
+KEYWORDS=~amd64 ~x86 ~x86-linux
+LICENSE=LGPL-2 GPL-2
+RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
+_eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=f38b5f9c96ef73ba01db2fbbae6d177b
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.650 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.650
deleted file mode 100644
index 00c76f130769..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.650
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2
-RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.650.tar.gz -> embassy-domainatrix-0.1.650.tar.gz
-_eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	emboss-r1	4845d0df55fa82758c20d0fb0ef1a2a2	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f736efc9a0d54c15287c4568ae92cc89
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
new file mode 100644
index 000000000000..0224bb2e2106
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=mysql pdf png postgres static-libs X
+KEYWORDS=~amd64 ~x86 ~x86-linux
+LICENSE=LGPL-2 GPL-2
+RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
+_eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=32111e984a719a10d3e7ed02155e7746
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.650 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.650
deleted file mode 100644
index a6b547091a31..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.650
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2
-RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.650.tar.gz -> embassy-domalign-0.1.650.tar.gz
-_eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	emboss-r1	4845d0df55fa82758c20d0fb0ef1a2a2	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=591dbe3b62f9f982e9210240a7d1b058
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
new file mode 100644
index 000000000000..521275d25aa6
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare
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index 3043e9fa3d0d..000000000000
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index 000000000000..09d51a3d1113
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deleted file mode 100644
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-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.650.tar.gz -> embassy-iprscan-4.3.1.650.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
new file mode 100644
index 000000000000..414c89f48def
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
@@ -0,0 +1,14 @@
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+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
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deleted file mode 100644
index 214ed440c94d..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.650
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new file mode 100644
index 000000000000..fa588626ddef
--- /dev/null
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+DESCRIPTION=EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation
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+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=mysql pdf png postgres static-libs X
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+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz
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deleted file mode 100644
index aca38617339e..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.650
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-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.650.tar.gz -> embassy-mse-3.0.0.650.tar.gz
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new file mode 100644
index 000000000000..c9867bd55a05
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+DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
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+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
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deleted file mode 100644
index 617770af3aac..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.650
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new file mode 100644
index 000000000000..de604975b1c1
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+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
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deleted file mode 100644
index 5b11239b475a..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.650
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-SLOT=0
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index 000000000000..7e913ce014ab
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diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.650 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.650
deleted file mode 100644
index 0cbd900af344..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.650
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of Protein structure add-on package
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2
-RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.650.tar.gz -> embassy-structure-0.1.650.tar.gz
-_eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
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diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
new file mode 100644
index 000000000000..e94228eef104
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DESCRIPTION=EMBOSS integrated version of Protein structure add-on package
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=mysql pdf png postgres static-libs X
+KEYWORDS=~amd64 ~x86 ~x86-linux
+LICENSE=LGPL-2 GPL-2
+RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
+_eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
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diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.650 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.650
deleted file mode 100644
index c50379b0d859..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.650
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of Transmembrane protein display
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2
-RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.650.tar.gz -> embassy-topo-2.0.650.tar.gz
-_eclass_exported_funcs=src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	emboss-r1	4845d0df55fa82758c20d0fb0ef1a2a2	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=975e6be6108d44dc96c33e700eaa31c0
diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
new file mode 100644
index 000000000000..0ab7d763941f
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DESCRIPTION=EMBOSS integrated version of Transmembrane protein display
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=mysql pdf png postgres static-libs X
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=LGPL-2 GPL-2
+RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
+_eclass_exported_funcs=src_prepare:emboss-r2 src_configure:emboss-r2 src_install:emboss-r2
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=9c114b14a376fe798b7090c303d92e67
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.650 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.650
deleted file mode 100644
index 9a873b1bd105..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.650
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2
-RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.650.tar.gz -> embassy-vienna-1.7.2.650.tar.gz
-_eclass_exported_funcs=src_prepare:emboss-r1 src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:autotools-utils
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	emboss-r1	4845d0df55fa82758c20d0fb0ef1a2a2	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=f921cf229de23bb26bba12e47b4caad1
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
new file mode 100644
index 000000000000..8e59ca999ef1
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=mysql pdf png postgres static-libs X
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=LGPL-2 GPL-2
+RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
+_eclass_exported_funcs=src_prepare:emboss-r2 src_configure:- src_install:emboss-r2
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=b393f27d72b82ff8bda5e96ecc1b7a28
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0 b/metadata/md5-cache/sci-biology/emboss-6.6.0
deleted file mode 100644
index 327de8231c92..000000000000
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0
+++ /dev/null
@@ -1,15 +0,0 @@
-DEFINED_PHASES=compile configure install postinst prepare test
-DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package
-EAPI=5
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=minimal mysql pdf png postgres static-libs X
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=LGPL-2 GPL-2 Apache-2.0 GPL-3+ CC-BY-3.0
-PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci-biology/prints sci-biology/prosite sci-biology/rebase )
-RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu ) png? ( media-libs/gd[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
-_eclass_exported_funcs=pkg_postinst:- src_prepare:emboss-r1 src_configure:emboss-r1 src_compile:autotools-utils src_test:autotools-utils src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	emboss-r1	4845d0df55fa82758c20d0fb0ef1a2a2	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	readme.gentoo-r1	03878c06495db70bc36bd717383c09f7	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=e1d694291a9d08c9d9028bffb2ad5845
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
new file mode 100644
index 000000000000..7981408910fa
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
@@ -0,0 +1,15 @@
+DEFINED_PHASES=configure install postinst prepare
+DEPEND=!<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
+DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package
+EAPI=6
+HOMEPAGE=http://emboss.sourceforge.net/
+IUSE=minimal mysql pdf png postgres static-libs X
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=LGPL-2 GPL-2 Apache-2.0 GPL-3+ CC-BY-3.0
+PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci-biology/prints sci-biology/prosite sci-biology/rebase )
+RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
+SLOT=0
+SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
+_eclass_exported_funcs=pkg_postinst:- src_prepare:emboss-r2 src_configure:emboss-r2 src_install:-
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	emboss-r2	2c9ee1a35ab52638295d46448a2d2ede	eutils	ea170b525f6a38a006be05c9d9429f13	flag-o-matic	f3d2dfb12521ff699df43be5d9a51dc4	libtool	4890219c51da247200223277f993e054	multilib	165fc17c38d1b11dac2008280dab6e80	readme.gentoo-r1	03878c06495db70bc36bd717383c09f7	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=b205936253bcef630e5a55a75ea3c484
diff --git a/metadata/md5-cache/sci-biology/prints-39.0 b/metadata/md5-cache/sci-biology/prints-39.0
index 8b365dfcaaf7..254d2d314a33 100644
--- a/metadata/md5-cache/sci-biology/prints-39.0
+++ b/metadata/md5-cache/sci-biology/prints-39.0
@@ -4,10 +4,10 @@ DESCRIPTION=A protein motif fingerprint database
 EAPI=0
 HOMEPAGE=http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/
 IUSE=emboss minimal
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/prints-39.0.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=95ddbee2ff12aff41f0113f8bc06a162
+_md5_=abfe2ca3466d22c63ac666737b3b9f10
diff --git a/metadata/md5-cache/sci-biology/prosite-19.36 b/metadata/md5-cache/sci-biology/prosite-19.36
index 7ad18e03b954..a2b99b94b7c9 100644
--- a/metadata/md5-cache/sci-biology/prosite-19.36
+++ b/metadata/md5-cache/sci-biology/prosite-19.36
@@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database
 EAPI=0
 HOMEPAGE=http://ca.expasy.org/prosite
 IUSE=emboss minimal
-KEYWORDS=amd64 x86
+KEYWORDS=~amd64 ~x86
 LICENSE=swiss-prot
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/prosite-19.36.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=8082c67792cbeee6c77862133f1eaaf4
+_md5_=7b40d76c0580645b04682a4cfa899e95
diff --git a/metadata/md5-cache/sci-biology/prosite-20.36 b/metadata/md5-cache/sci-biology/prosite-20.36
index 6564b076ed83..feb992585390 100644
--- a/metadata/md5-cache/sci-biology/prosite-20.36
+++ b/metadata/md5-cache/sci-biology/prosite-20.36
@@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database
 EAPI=0
 HOMEPAGE=http://ca.expasy.org/prosite
 IUSE=emboss minimal
-KEYWORDS=amd64 x86
+KEYWORDS=~amd64 ~x86
 LICENSE=swiss-prot
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/prosite-20.36.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=9ecbe86035d5260e9de47c79d104b906
+_md5_=7e3992e69a4428ff310cf9193685ddf4
diff --git a/metadata/md5-cache/sci-biology/prosite-20.52 b/metadata/md5-cache/sci-biology/prosite-20.52
index 7246d9292994..033d57b9e2a1 100644
--- a/metadata/md5-cache/sci-biology/prosite-20.52
+++ b/metadata/md5-cache/sci-biology/prosite-20.52
@@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database
 EAPI=0
 HOMEPAGE=http://ca.expasy.org/prosite
 IUSE=emboss minimal
-KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=swiss-prot
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/prosite-20.52.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=57a70df04c801e6fe09c7740954e03ff
+_md5_=8f14a8c8fd2a21b2b20e70734ddb7d8a
diff --git a/metadata/md5-cache/sci-biology/prosite-20.72 b/metadata/md5-cache/sci-biology/prosite-20.72
index 518fe2521694..4594f677e6a2 100644
--- a/metadata/md5-cache/sci-biology/prosite-20.72
+++ b/metadata/md5-cache/sci-biology/prosite-20.72
@@ -4,10 +4,10 @@ DESCRIPTION=A protein families and domains database
 EAPI=0
 HOMEPAGE=http://ca.expasy.org/prosite
 IUSE=emboss minimal
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=swiss-prot
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=0
 SRC_URI=mirror://gentoo/prosite-20.72.tar.bz2
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=fe92816478738bce4341c9bcf36f43be
+_md5_=8f14a8c8fd2a21b2b20e70734ddb7d8a
diff --git a/metadata/md5-cache/sci-biology/rebase-1612 b/metadata/md5-cache/sci-biology/rebase-1612
deleted file mode 100644
index 2e31d5b660c4..000000000000
--- a/metadata/md5-cache/sci-biology/rebase-1612
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile install
-DEPEND=emboss? ( >=sci-biology/emboss-5.0.0 )
-DESCRIPTION=A restriction enzyme database
-EAPI=6
-HOMEPAGE=http://rebase.neb.com
-IUSE=emboss minimal
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris
-LICENSE=public-domain
-RDEPEND=emboss? ( >=sci-biology/emboss-5.0.0 )
-RESTRICT=binchecks strip
-SLOT=0
-SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1612.tar.xz
-_eclass_exported_funcs=src_compile:- src_install:-
-_md5_=751dffb5b6fb5faf153aa8f8fec20fdb
diff --git a/metadata/md5-cache/sci-biology/rebase-1701 b/metadata/md5-cache/sci-biology/rebase-1701
index f57b14f325ca..e12c4df79766 100644
--- a/metadata/md5-cache/sci-biology/rebase-1701
+++ b/metadata/md5-cache/sci-biology/rebase-1701
@@ -4,11 +4,11 @@ DESCRIPTION=A restriction enzyme database
 EAPI=6
 HOMEPAGE=http://rebase.neb.com
 IUSE=emboss minimal
-KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 RDEPEND=emboss? ( >=sci-biology/emboss-5.0.0 )
 RESTRICT=binchecks strip
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/rebase-1701.tar.xz
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=dde9bc2abd9c51b448f10e38da9a4917
+_md5_=ab1273ba6a967f45da74fdecf1d1c84c
diff --git a/metadata/md5-cache/sci-biology/transfac-3.2 b/metadata/md5-cache/sci-biology/transfac-3.2
index 694f8cdf4d2f..33382b7c8944 100644
--- a/metadata/md5-cache/sci-biology/transfac-3.2
+++ b/metadata/md5-cache/sci-biology/transfac-3.2
@@ -4,10 +4,10 @@ DESCRIPTION=A database of eucaryotic transcription factors
 EAPI=0
 HOMEPAGE=http://www.gene-regulation.com/pub/databases.html
 IUSE=emboss minimal
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 RDEPEND=emboss? ( sci-biology/emboss )
 SLOT=3
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/databases/transfac/transfac32.tar.Z
 _eclass_exported_funcs=src_compile:- src_install:-
-_md5_=9f3a478574a503b4104d6fa3d4cd0a7c
+_md5_=c27225d57b45470ee505311f78a72c37
diff --git a/metadata/pkg_desc_index b/metadata/pkg_desc_index
index eecc95153a6a..c40b19511c98 100644
--- a/metadata/pkg_desc_index
+++ b/metadata/pkg_desc_index
@@ -15851,24 +15851,24 @@ sci-biology/dialign-tx 1.0.2-r1: Greedy and progressive approaches for segment-b
 sci-biology/dialign2 2.2.1: Multiple sequence alignment
 sci-biology/diya 1.0_rc4: Do It Yourself Annotation, tools & libraries for sequence assembly & annotation
 sci-biology/elph 0.1.5 1.0.1: Estimated Locations of Pattern Hits - Motif finder program
-sci-biology/embassy 6.6.0: A meta-package for installing all EMBASSY packages (EMBOSS add-ons)
-sci-biology/embassy-cbstools 1.0.0.650: EMBOSS integrated version of Applications from the CBS group
-sci-biology/embassy-clustalomega 1.1.0: EMBOSS integrated version of Clustal Omega - Scalable multiple protein sequences alignment
-sci-biology/embassy-domainatrix 0.1.650: EMBOSS integrated version of Protein domain analysis add-on package
-sci-biology/embassy-domalign 0.1.650: EMBOSS integrated version of Protein domain alignment add-on package
-sci-biology/embassy-domsearch 0.1.650: EMBOSS integrated version of Protein domain search add-on package
-sci-biology/embassy-emnu 1.05.650-r1: EMBOSS integrated version of Simple menu of EMBOSS applications
-sci-biology/embassy-esim4 1.0.0.650: EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
-sci-biology/embassy-hmmer 2.3.2.650: EMBOSS integrated version of Wrappers for HMMER - Biological sequence analysis with profile HMMs
-sci-biology/embassy-iprscan 4.3.1.650: EMBOSS integrated version of InterProScan motif detection add-on package
-sci-biology/embassy-meme 4.7.650: EMBOSS integrated version of Wrappers for MEME - Multiple Em for Motif Elicitation
-sci-biology/embassy-mse 3.0.0.650: EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
-sci-biology/embassy-phylipnew 3.69.650: EMBOSS integrated version of The Phylogeny Inference Package
-sci-biology/embassy-signature 0.1.650: EMBOSS integrated version of Protein signature add-on package
-sci-biology/embassy-structure 0.1.650: EMBOSS integrated version of Protein structure add-on package
-sci-biology/embassy-topo 2.0.650: EMBOSS integrated version of Transmembrane protein display
-sci-biology/embassy-vienna 1.7.2.650: EMBOSS integrated version of Vienna RNA package - RNA folding
-sci-biology/emboss 6.6.0: The European Molecular Biology Open Software Suite - A sequence analysis package
+sci-biology/embassy 6.6.0-r1: A meta-package for installing all EMBASSY packages (EMBOSS add-ons)
+sci-biology/embassy-cbstools 1.0.0.660: EMBOSS integrated version of Applications from the CBS group
+sci-biology/embassy-clustalomega 1.1.0.660: EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
+sci-biology/embassy-domainatrix 0.1.660: EMBOSS integrated version of Protein domain analysis add-on package
+sci-biology/embassy-domalign 0.1.660: EMBOSS integrated version of Protein domain alignment add-on package
+sci-biology/embassy-domsearch 0.1.660: EMBOSS integrated version of Protein domain search add-on package
+sci-biology/embassy-emnu 1.05.660: EMBOSS integrated version of Simple menu of EMBOSS applications
+sci-biology/embassy-esim4 1.0.0.660: EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
+sci-biology/embassy-hmmer 2.3.2.660: EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs
+sci-biology/embassy-iprscan 4.3.1.660: EMBOSS integrated version of InterProScan motif detection add-on package
+sci-biology/embassy-meme 4.7.660: EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation
+sci-biology/embassy-mse 3.0.0.660: EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
+sci-biology/embassy-phylipnew 3.69.660: EMBOSS integrated version of The Phylogeny Inference Package
+sci-biology/embassy-signature 0.1.660: EMBOSS integrated version of Protein signature add-on package
+sci-biology/embassy-structure 0.1.660: EMBOSS integrated version of Protein structure add-on package
+sci-biology/embassy-topo 2.0.660: EMBOSS integrated version of Transmembrane protein display
+sci-biology/embassy-vienna 1.7.2.660: EMBOSS integrated version of Vienna RNA package - RNA folding
+sci-biology/emboss 6.6.0-r1: The European Molecular Biology Open Software Suite - A sequence analysis package
 sci-biology/eugene 4.1 4.1d: Prokaryotic and Eukaryotic gene predictor
 sci-biology/exonerate 2.2.0-r1: Generic tool for pairwise sequence comparison
 sci-biology/express 0.9.5-r1 1.5.1: Streaming RNA-Seq Analysis
@@ -15927,7 +15927,7 @@ sci-biology/psipred 3.2.1 3.3 3.4 3.5: Protein Secondary Structure Prediction
 sci-biology/pysam 0.9.0: Python interface for the SAM/BAM sequence alignment and mapping format
 sci-biology/qrna 2.0.3c-r2: Prototype ncRNA genefinder
 sci-biology/raxml 7.2.6: Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees
-sci-biology/rebase 1612 1701: A restriction enzyme database
+sci-biology/rebase 1701: A restriction enzyme database
 sci-biology/recon 1.06-r1 1.06-r2: Automated de novo identification of repeat families from genomic sequences
 sci-biology/repeatmasker 4.0.1: Screen DNA sequences for interspersed repeats and low complexity DNA
 sci-biology/repeatmasker-libraries 20120418: A special version of RepBase used by RepeatMasker
diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk
index 9b1a4bb5bf99..5c9f66e4e96a 100644
--- a/metadata/timestamp.chk
+++ b/metadata/timestamp.chk
@@ -1 +1 @@
-Sun, 19 Feb 2017 18:42:48 +0000
+Sun, 19 Feb 2017 19:03:02 +0000