blob: f738f66ef751d0dca0fefa245273c6d1fec0ecd0 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
|
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.12 2010/10/02 15:08:42 dilfridge Exp $
inherit eutils toolchain-funcs
DESCRIPTION="Intelligent algorithms for DNA searches"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz"
LICENSE="BSD"
SLOT="0"
IUSE=""
KEYWORDS="~alpha ia64 ~sparc x86 ~amd64"
RDEPEND="~sci-biology/hmmer-2.3.2"
DEPEND="${RDEPEND}
app-shells/tcsh
dev-lang/perl
virtual/latex-base"
S="${WORKDIR}"/${PN}${PV}
src_unpack() {
unpack ${A}
cd "${S}"
epatch "${FILESDIR}"/${P}-glibc-2.10.patch
cd "${S}"/src
# if use threads; then
# append-flags "-DPTHREAD"
# sed -e "s/#EXTRALIBS = -lpthread/EXTRALIBS = -lpthread/" -i makefile || die
# fi
sed -e "s/CC = cc/CC = $(tc-getCC)/" \
-e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
-i makefile || die
cd "${S}"/docs
cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex
cat wise2api.tex temp.tex apiend.tex > api.tex
epatch "${FILESDIR}"/${PN}-api.tex.patch
}
src_compile() {
cd src
make all || die
cd "${S}"/docs
for i in api appendix dynamite wise2 wise3arch; do
latex ${i} || die
latex ${i} || die
dvips ${i}.dvi -o || die
done
}
src_install() {
dobin "${S}"/src/bin/* || die "Failed to install program"
dolib "${S}"/src/base/libwisebase.a || die "Failed to install libwisebase"
dolib "${S}"/src/dynlibsrc/libdyna.a || die "Failed to install libdyna"
dobin "${S}"/src/dynlibsrc/testgendb || die "Failed to install testgendb"
dolib "${S}"/src/models/libmodel.a || die "Failed to install libmodel"
insinto /usr/share/${PN}
doins -r "${S}"/wisecfg || die "Failed to install wisecfg"
insinto /usr/share/doc/${PF}
doins "${S}"/docs/*.ps || die "Failed to install documentation"
newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file"
}
src_test() {
cd "${S}"/src
WISECONFIGDIR="${S}/wisecfg" make test || die
}
|
GitWeb
