6 files changed, 47 insertions, 35 deletions
diff --git a/sci-biology/mothur/ChangeLog b/sci-biology/mothur/ChangeLog
index 38517a441a26..1a55788996bb 100644
--- a/sci-biology/mothur/ChangeLog
+++ b/sci-biology/mothur/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/mothur
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.13 2015/07/27 18:42:15 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.14 2015/08/03 12:54:49 ago Exp $
+
+  03 Aug 2015; Agostino Sarubbo <ago@gentoo.org> mothur-1.27.0-r1.ebuild:
+  Stable for amd64, wrt bug #556066
 
 *mothur-1.27.0-r1 (27 Jul 2015)
 
diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest
index 493570707e1b..774a66c1955c 100644
--- a/sci-biology/mothur/Manifest
+++ b/sci-biology/mothur/Manifest
@@ -1,30 +1,28 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
+Hash: SHA256
 
 AUX mothur-1.27.0-makefile.patch 1196 SHA256 970d789187d58081bda269a863d965c1601ee18e09c39aa6dcaba2ef0aa89f5a SHA512 8a78ddbc926d4e116deed440fda8431ccbca3299ac182fc84850259187dc130cc43fb6f23845d055d998293fa43f94cbe35930242c5f6aa049f8275ad3e42adf WHIRLPOOL c0ae488479f430f212ff2158b74aa61ef9547b865be1db7ca3b546edf48907aa9aead69acfbc02c35b7d675209ac8f7d267a8f9a98ff167a0f73d0fc2efdd6ea
 AUX mothur-1.27.0-overflows.patch 4894 SHA256 7b1f25400aa8f78ef55bcbd7d613eb877ce2774fc2e9492b6f9c544266661b5b SHA512 aa392b2060cecc38006a7ac50aaa8e4249a020029234ac2abdc33441b12a09faabb0335144ff4d888e55a1da1838a45347981f49f6658f3546a54a30b5e2133a WHIRLPOOL 7f0f8089b938c6a30ee13e217e21a4628ca56490aba36e7b6b14657ec70f3ba043243c80088be6b3e3d145835d4c3e3e3ee68d073f6556383a06e018f0cd716f
 DIST mothur-1.27.0.zip 7095054 SHA256 7521d0dfc849dc9ef707bf83032e471966914b9833247c49e5d30b8d9281a6c7 SHA512 81821ca95d4ce3f0d1e6aa920c4fe3fddd70f716157312ed0590c1c4ad728e6786bfe79f6badddcfb060ed5d1996cc1b5062c320a59209fef35f68e687ba3dd5 WHIRLPOOL 32e5c9c2be6e593b2dbc64be38c49b4dec3ea048cd3c972cf948136b394608a2dc168be58b7fb500a17fc6a152b7777fcd09b3f9fb3bf60c7dd92d043a4bf361
 DIST mothur-1.6.0.zip 465292 SHA256 75583a204d199ddcf9b845fc0adbaf240d7b1f08584fed5e6465982f68ffe121 SHA512 f775ff64991f00423108f295eca640f5c5d85a38e01b31af44ddf91f8897968e934f79899a21606dfd81fdc3e91751df277237e94d56d74f862e472e8da3386c WHIRLPOOL 31ca8decceb38ebd17f15c5f937df70b501833311cbf1aec794bb174d409a0c01e77abb399347781ad820c06411e56c566382a32818a0c57214aad2ad16cc132
-EBUILD mothur-1.27.0-r1.ebuild 998 SHA256 cbacf26f73267f49baa8ce150a505e6ff460e8416b6dd2371dd73732968111d2 SHA512 6ae95d3c8cc1f6a4a2eaeef578cf4a9e38b20b7315f0a66085a3b65a9554c59bc274d45366c995bfa051aff190e448833a4fd91e7c36f7a65e14d15afad2dee9 WHIRLPOOL 10d9386fadc02c79cb29a517e1b89c38855f7b5f2fbd84d606ee772164f9c4826722cef86880bae8f4340f650738b42b3e82141bf7be2e329d7f629e6fe5681d
+EBUILD mothur-1.27.0-r1.ebuild 996 SHA256 1d70f638155a51c202c3d082616f2391c25bae16435a8a8cc7359635173393aa SHA512 1ac19f2449b4a93c2a9f04b2da22cdeccc67c1a56297f8d33f9d4f07c2dc86cfe5d5d2696c903e63e76cc1dfcd735bfee632f65c037e9098df7b50fc2b6b3d51 WHIRLPOOL 7b116f61dfcd86daa1ca0b48ae8fe0560f5b0c5c45702b11f3357beba7ad03250cf88205fa808fa4fa7000153e8a6c8a8e25f533600875242177d317c710a66d
 EBUILD mothur-1.6.0.ebuild 723 SHA256 c7337c2cf7e5ba513ed6681f997ab50fde5b29eca205dc9bf36235d7a20642f2 SHA512 726f6794a05abcba3b2565746d7d3131352849baeb3b5817c97354b8b3e2f8fbec2459ff1e1a35933bc5eb997ebc15acb8df12d961cd551e9d1a1e227c841793 WHIRLPOOL 78d21046e8ee24a78a051802a9a59dde175855a5f3dcf869a7d1afe311880e4915acf8f3cf97b9a8643e4a9e81319cf41546ba6d091b2782bd98c8879e381c01
-MISC ChangeLog 2607 SHA256 434ea95cd52b49386184223a293d03212b465c5acda7cdc56ae91650e5de9323 SHA512 cdbaf8d96020142a20706a3ea3585acc96f5fe89b7b589023e62dc6aa98057608915d62bed900d4a68c7c57f87912b8ea79511fa3dc2e4dc36a1285d6f197d30 WHIRLPOOL 5f46ef5308b22afc313021f273adf877bf449b0908801b8dab7248b26be719ee2e0402ecc7abe842f06294ad21d2e4bf73cba69ba62eea3580269c6f1cb8859f
+MISC ChangeLog 2717 SHA256 0951ac13aa91ee601c257ec73a3b8261d0ab456853edb2af7c88abb96a4c7c23 SHA512 1f1cc58996af9e116ccedaaf6609b3227208939d13b027ef70f0694edf906b759fac42d57a37a5537b1ce2b8fd67a40a5dfc37e0dd0158fa6301e91a48481163 WHIRLPOOL 955bd00c7dc0a234fde17e2e82b203fbff7182b8d0eb4abc933a67b0d9a3d281c59a5bcd0034a8c171cc565d683c3b5ab2625c5845c8fd5637a0174a50008e48
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.1
+Version: GnuPG v2
 
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+=sprf
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diff --git a/sci-biology/mothur/mothur-1.27.0-r1.ebuild b/sci-biology/mothur/mothur-1.27.0-r1.ebuild
index b6b4e4fe0be6..9f18f61e6f9f 100644
--- a/sci-biology/mothur/mothur-1.27.0-r1.ebuild
+++ b/sci-biology/mothur/mothur-1.27.0-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.27.0-r1.ebuild,v 1.1 2015/07/27 18:42:15 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.27.0-r1.ebuild,v 1.2 2015/08/03 12:54:49 ago Exp $
 
 EAPI=5
 
@@ -13,7 +13,7 @@ SRC_URI="http://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip"
 LICENSE="GPL-3"
 SLOT="0"
 IUSE="mpi +readline"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 ~x86"
 
 RDEPEND="
 	sci-biology/uchime
diff --git a/sci-biology/uchime/ChangeLog b/sci-biology/uchime/ChangeLog
index 142eeea3ec4b..f19cc30f2c38 100644
--- a/sci-biology/uchime/ChangeLog
+++ b/sci-biology/uchime/ChangeLog
@@ -1,10 +1,12 @@
 # ChangeLog for sci-biology/uchime
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/uchime/ChangeLog,v 1.1 2012/08/14 15:36:10 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/uchime/ChangeLog,v 1.2 2015/08/03 12:54:53 ago Exp $
+
+  03 Aug 2015; Agostino Sarubbo <ago@gentoo.org> uchime-4.2.40.ebuild:
+  Stable for amd64, wrt bug #556066
 
 *uchime-4.2.40 (14 Aug 2012)
 
   14 Aug 2012; Justin Lecher <jlec@gentoo.org> +uchime-4.2.40.ebuild,
   +files/CMakeLists.txt, +metadata.xml:
   New addition
-
diff --git a/sci-biology/uchime/Manifest b/sci-biology/uchime/Manifest
index 99277c0d8418..b947d082eddf 100644
--- a/sci-biology/uchime/Manifest
+++ b/sci-biology/uchime/Manifest
@@ -3,14 +3,23 @@ Hash: SHA256
 
 AUX CMakeLists.txt 549 SHA256 56ab311986a4ebf20dc8a0929d0ab1820233c0a81e7802b40ee683cf64895031 SHA512 02b43fbfa0a8fd9e5389033e5a8b97d356dfc2d29d076539eea5830b30526745014bc1eab302ccb8fd27b65a1afd92537b94c3c266a4b285de1b7a287fa8a867 WHIRLPOOL 8fa3739e15061160c78174c43f8b029ba46c1f892e3bc5686f4dca306f72bcbc3f96acfedb670db5c8b11ab642740e26f58860a83c148a7b8e1bc11927943016
 DIST uchime4.2.40_src.tar.gz 66772 SHA256 cb6a3aea4e8b4343a6e0ddde3b2755bbec53492bae5d6252ce8a7091061f353d SHA512 c3afecb23d164d9c3db6229f54faa13120ac4d88132d9aef707f8d043091099db4205ac80f60242920af6efc23813b3e7e4966d562bdb75ff53244fd525e656b WHIRLPOOL 28ad19892ac8b4db03e93fd1fca39b05d6675c241a97f7a2ab241765589b34c56684ab4923eaf568a5f9b0e1583ce1460be7f0edf9d9201e5d3db3da0efb0ee6
-EBUILD uchime-4.2.40.ebuild 588 SHA256 bc6dadaf35e140f4d79a2e9baed11ccc4225ef6b590485977493a152280dc2de SHA512 6538b7920b121796cc6e29f400e8db8150c2670372f3302d4addab1a14193b1f16e842b9cfb94b9d88944091750340aec638cbec37b9604cbc22e52339f3361c WHIRLPOOL 6fe2c16ab03587a0b6704b3811ffbe034ea8ec1b4dafd3c2d715a8a126cff65fee88b7ddcc57d3f50b31b52bcc7bdd0633ddfba43c8fd23a1d9e274abffeb6ae
-MISC ChangeLog 363 SHA256 cf3f65bb92e6406e513a452d445cce14860e23e66a0b5d29be56e75dd081e957 SHA512 a12c855c1400ed203794d42f2f9e7f9ed3ca588007d605c08782075098cce77124779c1e32a86358f4bce6ae55cccb6a0f9446281ee959772ab7759a03a22454 WHIRLPOOL 4d26313282962abc3a471c98768d75a326570a4a2af16eb714f1673c51e0360ff5a1162562287995ac7040f0b8d9834be86f2bc9bb8eed320e2544a500d5588d
+EBUILD uchime-4.2.40.ebuild 586 SHA256 d8fa52d4e64a9b6ba6459d0071c24752427d53fd5a818879969f38624cf32738 SHA512 c38d544677b8c6dc6f4f11eb36752c1f1f996dd009a9bcd31d6390cc6be6d1c9fd10ea7f910647306e9d3052946b08bc8e7a62d958580cbe4f06080bc18f1413 WHIRLPOOL 3f5d8c566f26cda76b7263acdf3dd2c14ffb87158ffb98b8b701d63fe8f4a7f87199457a4b4bc058fbf79a46b4cea406a6cc20a7ad5dad1cce2f8d6aa36227e3
+MISC ChangeLog 469 SHA256 616bb24f77f9c8e836e4752ee8f78c401dfd1e61127a94fdcab85c16747447e4 SHA512 f9cdd5ed5886021656d794f5299bafbd8719ea4b1c47dd2550df245827225f35613056923ea4f5ee33fe9add78ef2409be0ebbd0b953b86af75d89ee950314fa WHIRLPOOL df6ab45687bc4ed06d242530b3d0f325a6e3a1747f9a8b6bd66e76073ac38e699c9e98360292f4a3aa3c8817ecbdd07869d680fb355760da7ac1e4e593a67476
 MISC metadata.xml 800 SHA256 7f1d9ed66307a88b6da76f46fb220d20094eae39555755d51fefed9e7fc7dc14 SHA512 eb8daf509744d3bb8118de813bb1408412ad223045589fd7757916a2fb6d52d68006f8ecca3618ef05a1f8084d1fc26a4ac12895ff35f674e1fd695afac53827 WHIRLPOOL 6717e737a3cb9908e78058b76839726f56f8fe09dbb70dead028652581ee2bea1d05df0fe6a2ffa921f960655efae6e01425d2f187f33da60ead35c2f5a5b7ff
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
-Comment: GPGTools - http://gpgtools.org
+Version: GnuPG v2
 
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 -----END PGP SIGNATURE-----
diff --git a/sci-biology/uchime/uchime-4.2.40.ebuild b/sci-biology/uchime/uchime-4.2.40.ebuild
index 705b85640866..9c5eda77547f 100644
--- a/sci-biology/uchime/uchime-4.2.40.ebuild
+++ b/sci-biology/uchime/uchime-4.2.40.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/uchime/uchime-4.2.40.ebuild,v 1.1 2012/08/14 15:36:10 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/uchime/uchime-4.2.40.ebuild,v 1.2 2015/08/03 12:54:53 ago Exp $
 
 EAPI=4
 
@@ -14,7 +14,7 @@ SRC_URI="http://drive5.com/${PN}/${MY_P}.tar.gz"
 
 SLOT="0"
 LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="debug"
 
 S="${WORKDIR}"/${MY_P}