diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/snpfile/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/snpfile/Manifest | 15 | ||||
| -rw-r--r-- | sci-biology/snpfile/files/snpfile-2.0.1-gcc44.patch | 12 | ||||
| -rw-r--r-- | sci-biology/snpfile/snpfile-2.0.1.ebuild | 13 |
4 files changed, 29 insertions, 17 deletions
diff --git a/sci-biology/snpfile/ChangeLog b/sci-biology/snpfile/ChangeLog index c3f7f417a403..e58701876e7b 100644 --- a/sci-biology/snpfile/ChangeLog +++ b/sci-biology/snpfile/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/snpfile # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/ChangeLog,v 1.3 2009/05/24 17:31:29 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/ChangeLog,v 1.4 2009/07/26 18:33:52 ssuominen Exp $ + + 26 Jul 2009; Samuli Suominen <ssuominen@gentoo.org> snpfile-2.0.1.ebuild, + +files/snpfile-2.0.1-gcc44.patch: + Fix building with GCC 4.4 wrt #276196. 24 May 2009; Markus Meier <maekke@gentoo.org> snpfile-2.0.1.ebuild: amd64/x86 stable, bug #269967 diff --git a/sci-biology/snpfile/Manifest b/sci-biology/snpfile/Manifest index 133406881e49..21a7fb2c61a2 100644 --- a/sci-biology/snpfile/Manifest +++ b/sci-biology/snpfile/Manifest @@ -1,14 +1,5 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - +AUX snpfile-2.0.1-gcc44.patch 387 RMD160 0a31eb4741dd824ab35c7559e89787ee589e3788 SHA1 a2abee114666c397f8f2d6c987ad3648d4aa37cf SHA256 349c6594759f16da2602415ff217c37bb677e2508437497b508c91ab4668956a DIST snpfile-2.0.1.tar.gz 171854 RMD160 0d3f44bab5a59636aa4b1901c0ce5816b62a346a SHA1 d5f7c58540782d76a7aed9c13fc5bedab2d69a0b SHA256 71569e0dcd426447d1a5d215fb47615074a4c8d935cf70ef63c5f47a411b0b76 -EBUILD snpfile-2.0.1.ebuild 607 RMD160 4233b33c29f134f81918cfaf7182b1a5084af0e8 SHA1 ca029cf2e07f15a0360cdcaddb9c1691527dcc66 SHA256 8973e8e7fb3fa693ac5af001dfb28a518947b356b962cb090b411bf36c2107d9 -MISC ChangeLog 578 RMD160 8804fe6a4413076ee73a906ee168e2c6011714e5 SHA1 ce1ec8a4e9ee5355ffd0592294e70d26aeb3b952 SHA256 520e8ea8faf6e0ded7f0826ddeae7c7b02593fa84be77fa7de0254f71ca7eb77 +EBUILD snpfile-2.0.1.ebuild 676 RMD160 e0519c79b1ed69b0541903c1ae72007a88746290 SHA1 c779886c1e6238ce7b86348f92b2a0e0cf8d4e76 SHA256 7f696bc551aa546e7225045b895452242779919cabed3b80d21aa8103ea232d9 +MISC ChangeLog 735 RMD160 8c75fd07550c2401634b74b2fd3f28fe23789e29 SHA1 1ee56969fb6c5793675de4d43c31f3ffd7b9cad7 SHA256 e834a5f98854ddd91838c55b74767fa209bf44536bacd5558f2a03cbcba900dd MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAkoZhIYACgkQkKaRLQcq0GKVuQCgs0GnK0wfYaZklCEUZP58vQPL -gjoAnin/2VgROzVltoSysRCN/FlLHTOP -=Napm ------END PGP SIGNATURE----- diff --git a/sci-biology/snpfile/files/snpfile-2.0.1-gcc44.patch b/sci-biology/snpfile/files/snpfile-2.0.1-gcc44.patch new file mode 100644 index 000000000000..2b79c2492ede --- /dev/null +++ b/sci-biology/snpfile/files/snpfile-2.0.1-gcc44.patch @@ -0,0 +1,12 @@ +diff -ur snpfile-2.0.1.orig/input_archive.hh snpfile-2.0.1/input_archive.hh +--- snpfile-2.0.1.orig/input_archive.hh 2008-05-03 17:25:44.000000000 +0300 ++++ snpfile-2.0.1/input_archive.hh 2009-07-26 21:26:10.000000000 +0300 +@@ -26,6 +26,8 @@ + #ifndef INPUT_ARCHIVE_HH_INCLUDED + #define INPUT_ARCHIVE_HH_INCLUDED + ++#include <stdint.h> ++ + #include <string> + + #include "archive_common.hh" diff --git a/sci-biology/snpfile/snpfile-2.0.1.ebuild b/sci-biology/snpfile/snpfile-2.0.1.ebuild index 5dd380d22068..c99afe902442 100644 --- a/sci-biology/snpfile/snpfile-2.0.1.ebuild +++ b/sci-biology/snpfile/snpfile-2.0.1.ebuild @@ -1,7 +1,8 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/snpfile-2.0.1.ebuild,v 1.2 2009/05/24 17:31:29 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/snpfile-2.0.1.ebuild,v 1.3 2009/07/26 18:33:52 ssuominen Exp $ +EAPI=2 inherit eutils DESCRIPTION="A library and API for manipulating large SNP datasets" @@ -13,9 +14,13 @@ SLOT="0" IUSE="" KEYWORDS="amd64 x86" -DEPEND="dev-libs/boost" -RDEPEND="${DEPEND}" +RDEPEND="dev-libs/boost" +DEPEND="${RDEPEND}" + +src_prepare() { + epatch "${FILESDIR}"/${P}-gcc44.patch +} src_install() { - emake install DESTDIR="${D}" || die "emake install failed" + emake DESTDIR="${D}" install || die "emake install failed" } |