diff options
Diffstat (limited to 'sci-biology/seaview')
-rw-r--r-- | sci-biology/seaview/ChangeLog | 6 | ||||
-rw-r--r-- | sci-biology/seaview/Manifest | 24 | ||||
-rw-r--r-- | sci-biology/seaview/files/digest-seaview-20060213 | 3 | ||||
-rw-r--r-- | sci-biology/seaview/files/digest-seaview-20070919 | 3 | ||||
-rw-r--r-- | sci-biology/seaview/seaview-20060213.ebuild | 46 | ||||
-rw-r--r-- | sci-biology/seaview/seaview-20070919.ebuild | 52 |
6 files changed, 9 insertions, 125 deletions
diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog index 6074a4c31199..2c54932284ec 100644 --- a/sci-biology/seaview/ChangeLog +++ b/sci-biology/seaview/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/seaview # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.16 2007/12/19 07:38:37 je_fro Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.17 2007/12/22 22:01:18 je_fro Exp $ + + 22 Dec 2007; <jeff@gentoo.org> -seaview-20060213.ebuild, + -seaview-20070919.ebuild: + Removing obsolete versions *seaview-2.2 (19 Dec 2007) diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest index 03a55c03e477..cc2f087e554d 100644 --- a/sci-biology/seaview/Manifest +++ b/sci-biology/seaview/Manifest @@ -3,8 +3,6 @@ MD5 bb0252cbbaa26ea6d15e7ad7f720b503 files/seaview.desktop 188 RMD160 e7b97646c16bcf57a032c83ad9dad7d7912b769e files/seaview.desktop 188 SHA256 cdcb6a86d2c21a3a74a684aed28398b869d5dcd878385c30bf84f91e83446d30 files/seaview.desktop 188 DIST seaview-20041220.tar.bz2 115192 RMD160 a557e906c9115db74ddfdecc4fdc647df336b3c3 SHA1 f237a7ccc0ba7e69c6b61a6aaac4ae4d0be12c71 SHA256 045b09e08d49f9630243e3bc19d8cc630874e1c4f64a1d91997e76e5af2cd6d7 -DIST seaview-20060213.tar.bz2 114995 RMD160 c3409b5e06f15e983db4912812381ee5d5894ea9 SHA1 6dffddf934e82eb155e47dcd58f9a5612511fcff SHA256 be058f53f07cec46978f10ddad8794bbe79762cf089d18b5cbe7cb6ed15c54fc -DIST seaview-20070919.tar.bz2 129867 RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f SHA1 db2d36e6ef7cd446caf79cb93258c3b72b067248 SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33 DIST seaview_2.2.tar.gz 155877 RMD160 59b9b0782138a2c46a6fec36cf15042b37aa72de SHA1 d38191022bfe95112460800a1fc1dcefbc761bec SHA256 ad1d7a66dcc5f97538b2d51e3a4e91295476c1fdd2b8877073bd12bab4d86d99 EBUILD seaview-2.2.ebuild 1358 RMD160 44e17398b6ea3be32d9545db96cb16683c4c2f3a SHA1 e746ebfa954c4bdc5b119d8e9a43556942faf841 SHA256 06330692de7962f6289c34711ad4bb5c3c024658777abed77b1bf3fae770267f MD5 a3113b8a30fc20f193aaaa4601b0a91e seaview-2.2.ebuild 1358 @@ -14,18 +12,10 @@ EBUILD seaview-20041220.ebuild 1251 RMD160 8442894ac4b6677ede0ad4c16b3811f9b75fe MD5 08ec0631100adb67aaba3be99b50fac4 seaview-20041220.ebuild 1251 RMD160 8442894ac4b6677ede0ad4c16b3811f9b75feec9 seaview-20041220.ebuild 1251 SHA256 7525d4b7acc91570afc0d834f578ee914efd621861973c6870618a05517ffa8d seaview-20041220.ebuild 1251 -EBUILD seaview-20060213.ebuild 1278 RMD160 c34fab8aab79e7575f4795d8be807e943615da73 SHA1 7724e43669e984f2bffea939e37c3f2ff7ce44d4 SHA256 30b758ea8a1fea7999793939592558dc8d148f491ea8fc17ec1ed12ccea6ccae -MD5 5239206616d1286f408af85c91e5a146 seaview-20060213.ebuild 1278 -RMD160 c34fab8aab79e7575f4795d8be807e943615da73 seaview-20060213.ebuild 1278 -SHA256 30b758ea8a1fea7999793939592558dc8d148f491ea8fc17ec1ed12ccea6ccae seaview-20060213.ebuild 1278 -EBUILD seaview-20070919.ebuild 1400 RMD160 185c09dbfd7aebc59378ae2120a895eb392bdb25 SHA1 667482cb92637986c5278fe3ddf175f82ab9252b SHA256 7ec52ab965ad32515c111688916441d86ca8cd262ece5974ff736db37cdfc8ab -MD5 7a51ed6f791962db3638740ec5bde158 seaview-20070919.ebuild 1400 -RMD160 185c09dbfd7aebc59378ae2120a895eb392bdb25 seaview-20070919.ebuild 1400 -SHA256 7ec52ab965ad32515c111688916441d86ca8cd262ece5974ff736db37cdfc8ab seaview-20070919.ebuild 1400 -MISC ChangeLog 3179 RMD160 dc8177db2f04db09e6834b64ded9e2a32b662715 SHA1 f78db3f3b37ae04564d657333fa63d9d2a9252f7 SHA256 e71727753149f606f46e2ef9a1070088fd2a6656cc8ba3460a5e7943fd3957fd -MD5 c80047a340aa3f840e8c37248ba7b812 ChangeLog 3179 -RMD160 dc8177db2f04db09e6834b64ded9e2a32b662715 ChangeLog 3179 -SHA256 e71727753149f606f46e2ef9a1070088fd2a6656cc8ba3460a5e7943fd3957fd ChangeLog 3179 +MISC ChangeLog 3296 RMD160 aa32cb6b0bdeb72f12d53df05358f6b6d22a46ff SHA1 189dd59e007c16e4c035306ddc912d1d6637a68a SHA256 d41807baf15fe061af978506c121d3e5241bbc73c2cb86e806ee7c7844ee5eb8 +MD5 ea00f0c3aef538589f9e2aa316b2257c ChangeLog 3296 +RMD160 aa32cb6b0bdeb72f12d53df05358f6b6d22a46ff ChangeLog 3296 +SHA256 d41807baf15fe061af978506c121d3e5241bbc73c2cb86e806ee7c7844ee5eb8 ChangeLog 3296 MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622 @@ -36,9 +26,3 @@ SHA256 e4b522345bdf014d57eda6efdaefe1b248c01324c3a6b3f90a5c32d3ef3d2d36 files/di MD5 5b1989dfbbf9ea843666ea3218872d1e files/digest-seaview-20041220 253 RMD160 49aefa5d6c963205cbe4ff5a47d5045f21f0d079 files/digest-seaview-20041220 253 SHA256 36bbcb192079998e4b6b5601cdba9d35fe7a8cf850cfb97b4d5cc93ea11e90e8 files/digest-seaview-20041220 253 -MD5 12f7be8bda68958f3fd458149b5cdb6a files/digest-seaview-20060213 253 -RMD160 2c5874f5e8f1e778044c4f1c462ae158c9aaaf25 files/digest-seaview-20060213 253 -SHA256 b91aecb8cac59c15a14b1e5f925c8b065f3a929f636adbea74e5331fbe4153e5 files/digest-seaview-20060213 253 -MD5 45aa688396038db1079a932bd2cdf57c files/digest-seaview-20070919 253 -RMD160 530dd5235936f0920209c8e101fb5b8aee19de28 files/digest-seaview-20070919 253 -SHA256 798c5db6eb97a43719bc4bff4bab0e0043b1cb7cf3c72c092b9d256dd3229e9d files/digest-seaview-20070919 253 diff --git a/sci-biology/seaview/files/digest-seaview-20060213 b/sci-biology/seaview/files/digest-seaview-20060213 deleted file mode 100644 index 331a45c8c96d..000000000000 --- a/sci-biology/seaview/files/digest-seaview-20060213 +++ /dev/null @@ -1,3 +0,0 @@ -MD5 f44a1ea1ef0922e97fb26cbfeb80ca9d seaview-20060213.tar.bz2 114995 -RMD160 c3409b5e06f15e983db4912812381ee5d5894ea9 seaview-20060213.tar.bz2 114995 -SHA256 be058f53f07cec46978f10ddad8794bbe79762cf089d18b5cbe7cb6ed15c54fc seaview-20060213.tar.bz2 114995 diff --git a/sci-biology/seaview/files/digest-seaview-20070919 b/sci-biology/seaview/files/digest-seaview-20070919 deleted file mode 100644 index e8fa4d2c65e9..000000000000 --- a/sci-biology/seaview/files/digest-seaview-20070919 +++ /dev/null @@ -1,3 +0,0 @@ -MD5 aa7a0d87d2cf4a69d3b639ac9c1aef06 seaview-20070919.tar.bz2 129867 -RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f seaview-20070919.tar.bz2 129867 -SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33 seaview-20070919.tar.bz2 129867 diff --git a/sci-biology/seaview/seaview-20060213.ebuild b/sci-biology/seaview/seaview-20060213.ebuild deleted file mode 100644 index b6d5509117b3..000000000000 --- a/sci-biology/seaview/seaview-20060213.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20060213.ebuild,v 1.4 2007/10/21 16:41:08 je_fro Exp $ - -inherit toolchain-funcs multilib - -DESCRIPTION="A graphical multiple sequence alignment editor" -HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="~x86 ~ppc ~amd64" -IUSE="" - -DEPEND="x11-libs/fltk - =media-libs/pdflib-6.0* - sci-biology/clustalw" - -src_unpack() { - unpack ${A} - cd "${S}" - - sed -i \ - -e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx || die - - # Respect CXXFLAGS. Package uses CFLAGS as CXXFLAGS. - # Fix invocation of C++ compiler. - # Fix include and library paths. - sed -i \ - -e '/^FLTK/d' \ - -e '/^X11/d' \ - -e "s:^CXX.*:CXX = $(tc-getCXX):" \ - -e 's:-I$(FLTK):-I/usr/include/fltk-1.1:' \ - -e 's:-I$(X11)/include:-I/usr/include/X11R6:' \ - -e "s:\(^CFLAGS .*\):\1 ${CXXFLAGS}:" \ - -e "s:-L\$(FLTK)/lib:-L/usr/$(get_libdir)/fltk-1.1:" \ - -e "s:-L\$(X11)/lib:-L/usr/$(get_libdir)/X11:" \ - Makefile || die -} - -src_install() { - dobin seaview seaview_align.sh - insinto /usr/share/${PN} - doins protein.mase seaview.help -} diff --git a/sci-biology/seaview/seaview-20070919.ebuild b/sci-biology/seaview/seaview-20070919.ebuild deleted file mode 100644 index 8bf403f5cb37..000000000000 --- a/sci-biology/seaview/seaview-20070919.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20070919.ebuild,v 1.5 2007/10/22 23:23:42 je_fro Exp $ - -inherit toolchain-funcs multilib - -DESCRIPTION="A graphical multiple sequence alignment editor" -HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="~x86 ~ppc ~amd64" -IUSE="" - -DEPEND="x11-libs/fltk - media-libs/pdflib - sci-biology/clustalw - sci-biology/muscle" - -src_unpack() { - unpack ${A} - cd "${S}" - - # Respect CXXFLAGS. Package uses CFLAGS as CXXFLAGS. - # Fix invocation of C++ compiler. - # Fix include and library paths. - sed -i \ - -e '/^FLTK/d' \ - -e '/^X11/d' \ - -e 's:#HELP_NOT:HELP_NOT:' \ - -e "s:bge\/mgouy\/seaview:usr/share/${PN}:" \ - -e "s:^CXX.*:CXX = $(tc-getCXX):" \ - -e 's:-I$(FLTK):-I/usr/include/fltk-1.1:' \ - -e 's:-I$(X11)/include:-I/usr/include/X11R6:' \ - -e "s:\(^CFLAGS .*\):\1 ${CXXFLAGS}:" \ - -e "s:-L\$(FLTK)/lib:-L/usr/$(get_libdir)/fltk-1.1:" \ - -e "s:-L\$(X11)/lib:-L/usr/$(get_libdir)/X11:" \ - Makefile || die -} - -src_install() { - dobin seaview seaview_align.sh - insinto /usr/share/${PN} - doins protein.mase seaview.help - - insinto /usr/share/pixmaps/ - doins "${S}/${PN}.xpm" - - insinto /usr/share/applications/ - doins "${FILESDIR}/${PN}.desktop" -} |