diff options
Diffstat (limited to 'sci-biology/cutg')
| -rw-r--r-- | sci-biology/cutg/Manifest | 24 | ||||
| -rw-r--r-- | sci-biology/cutg/cutg-148.ebuild | 46 | ||||
| -rw-r--r-- | sci-biology/cutg/cutg-149.ebuild | 46 | ||||
| -rw-r--r-- | sci-biology/cutg/files/digest-cutg-148 | 1 | ||||
| -rw-r--r-- | sci-biology/cutg/files/digest-cutg-149 | 3 |
5 files changed, 4 insertions, 116 deletions
diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest index 1e5f91413e40..16548d895624 100644 --- a/sci-biology/cutg/Manifest +++ b/sci-biology/cutg/Manifest @@ -1,15 +1,5 @@ -DIST CUTG.148.tar.gz 144554145 -DIST CUTG.149.tar.gz 152014260 RMD160 e0448cb0980197a9b798b3f6943a88e239dc0f65 SHA1 e5c79ae389d5730eb3f31a493ef4b1f1c67ed660 SHA256 dc5c30b0351d896725c674a68c1b20192533fc41f183131ec1d7443c12575439 DIST CUTG.150.tar.gz 158138458 RMD160 84ab5640dfdf3a9a6f3e0aeb90fa5c29f4c41eea SHA1 52e25ef85ec0482403728677582668b7ef1e0e2b SHA256 76c32ab56d71002e3054baeb2910b2e37fd6e906d6285646a277abb18394065c DIST CUTG.151.tar.gz 165813396 RMD160 77a304321f1535af8bb6eff1ce5c8e559a64535c SHA1 0327ccf522d9e38ab6e261bb0e2077533bf1892b SHA256 8184ac1a99ba54791d4ca672d514daeafd7e6736e76524fbbd7b3930d7d8534f -EBUILD cutg-148.ebuild 1275 RMD160 44481a68636bb8a8b5a8e936e9e46bdf8e4fa0b5 SHA1 6c31b56c08f0a3e7c3aa620d109407c0c2ae7fa9 SHA256 3436fb0cff18ef4ac17070a8da09510128b62d22987b2ea51877e017f30a7260 -MD5 e3bc6c082845cbe0dc872317450ca79b cutg-148.ebuild 1275 -RMD160 44481a68636bb8a8b5a8e936e9e46bdf8e4fa0b5 cutg-148.ebuild 1275 -SHA256 3436fb0cff18ef4ac17070a8da09510128b62d22987b2ea51877e017f30a7260 cutg-148.ebuild 1275 -EBUILD cutg-149.ebuild 1290 RMD160 75617d866ab47b02e2bf6a82a895e7849514f82f SHA1 a80edae3bf9aab02a78c3514880a06a1dfd558c9 SHA256 8a52b0e1c94d4b15f119c15d93f47870aa270f0ff01818fdd11fb4f043a97114 -MD5 39a88f108c26b6f5a3fbd9dc51a0c146 cutg-149.ebuild 1290 -RMD160 75617d866ab47b02e2bf6a82a895e7849514f82f cutg-149.ebuild 1290 -SHA256 8a52b0e1c94d4b15f119c15d93f47870aa270f0ff01818fdd11fb4f043a97114 cutg-149.ebuild 1290 EBUILD cutg-150.ebuild 1290 RMD160 1c1e7e0b96a6b6c715b2606cba821b8942d7126c SHA1 6e2d25aab15604cd61ede703acffde0932609df7 SHA256 7f5e677e75be2934ef759113c614d39a4af9153f010f0f620131c06908d2deb7 MD5 cb31be93a8b2d2affdb9c765938fd404 cutg-150.ebuild 1290 RMD160 1c1e7e0b96a6b6c715b2606cba821b8942d7126c cutg-150.ebuild 1290 @@ -18,20 +8,14 @@ EBUILD cutg-151.ebuild 1300 RMD160 5493876a95829ba14f901511a80d6dfcce0803a3 SHA1 MD5 6d90cc1b3ccc1d4e29c11c8499894c5d cutg-151.ebuild 1300 RMD160 5493876a95829ba14f901511a80d6dfcce0803a3 cutg-151.ebuild 1300 SHA256 03dcf4e3036e741068c92816f8a67cba90608e54e2e0691caaa5b305214aabdb cutg-151.ebuild 1300 -MISC ChangeLog 5734 RMD160 7b746dd80edf130e10fe8175c7fafef8b39cad9e SHA1 5580d0feb4a84caf1f343dfe446f42118e7914ae SHA256 ceb8a4efebdf96560d8c7497ccdc6e6c30af30bb6644417515e79f99e36c94c8 -MD5 414e5f5ced18a112a8453b84e1f2b935 ChangeLog 5734 -RMD160 7b746dd80edf130e10fe8175c7fafef8b39cad9e ChangeLog 5734 -SHA256 ceb8a4efebdf96560d8c7497ccdc6e6c30af30bb6644417515e79f99e36c94c8 ChangeLog 5734 +MISC ChangeLog 5850 RMD160 f3f5e7a5aba8c20a65a4dbf06d2fee7ec3d22d60 SHA1 76a9ad8d32fd30a9d9dbd89cd328f358509912cc SHA256 8c1db0a6aa9a8eeeb993fa420aac89eaa2178815b915249f58bcb21d4e538a8b +MD5 4d762f993cc5b9ffd0ab965cafd25d0c ChangeLog 5850 +RMD160 f3f5e7a5aba8c20a65a4dbf06d2fee7ec3d22d60 ChangeLog 5850 +SHA256 8c1db0a6aa9a8eeeb993fa420aac89eaa2178815b915249f58bcb21d4e538a8b ChangeLog 5850 MISC metadata.xml 602 RMD160 0bfaf291f7a1ef2d7c7c3c56b307faeb2d73a14a SHA1 029a446c9375b8a243aa2ef848a6d73144495d81 SHA256 99510df8b62ab52d5ad0a72077f01df7e0e9ccaf374a3456e4a39fb9821aa46a MD5 35b8093f40dbeaa81ac2e1da6fb9c7a9 metadata.xml 602 RMD160 0bfaf291f7a1ef2d7c7c3c56b307faeb2d73a14a metadata.xml 602 SHA256 99510df8b62ab52d5ad0a72077f01df7e0e9ccaf374a3456e4a39fb9821aa46a metadata.xml 602 -MD5 8fe4ad8cd05d6466bcf6c253c5a18ba4 files/digest-cutg-148 63 -RMD160 ebcd898db2a16105c83364922cf4d9c9c87e4188 files/digest-cutg-148 63 -SHA256 db5c885fe2d472f2c28c3e44d257622355d5d133aeb79a8e8a73d188f5151b18 files/digest-cutg-148 63 -MD5 ec5be83cdbafcccc02f326a3562771b1 files/digest-cutg-149 235 -RMD160 72d67420820b16d1d40c40a9d9181f47d6576379 files/digest-cutg-149 235 -SHA256 1a757114aa3931624082276bde6244a950d9ee011a0db559d5cd960ba4545d6f files/digest-cutg-149 235 MD5 4e8a803d3dbbd682ad72da2f4efdf0d0 files/digest-cutg-150 235 RMD160 f59d7b8a24257a6c1ee64de8b533c7a85630d40f files/digest-cutg-150 235 SHA256 52e76d1e2df33192f485b18cf44236637883baeb632633c611eb562005de8d5c files/digest-cutg-150 235 diff --git a/sci-biology/cutg/cutg-148.ebuild b/sci-biology/cutg/cutg-148.ebuild deleted file mode 100644 index 9263d905b510..000000000000 --- a/sci-biology/cutg/cutg-148.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2006 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-148.ebuild,v 1.8 2006/11/02 21:51:19 grobian Exp $ - -DESCRIPTION="Codon usage tables calculated from GenBank" -HOMEPAGE="http://www.kazusa.or.jp/codon/" -SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="amd64 ppc ppc64 x86" -IUSE="emboss minimal" -# Minimal build keeps only the indexed files (if applicable) and the documentation. -# The non-indexed database is not installed. - -DEPEND="emboss? ( sci-biology/emboss )" - -S=${WORKDIR} - -src_compile() { - if use emboss; then - mkdir CODONS - echo - einfo "Indexing CUTG for usage with EMBOSS." - EMBOSS_DATA="." cutgextract -auto -directory ${S} || die \ - "Indexing CUTG failed." - echo - fi -} - -src_install() { - if ! use minimal; then - mkdir -p ${D}usr/share/${PN} - mv *.codon *.spsum ${D}usr/share/${PN} || die \ - "Installing raw CUTG database failed." - fi - dodoc README - if use emboss; then - mkdir -p ${D}usr/share/EMBOSS/data/CODONS - cd CODONS - for file in *; do - mv ${file} ${D}usr/share/EMBOSS/data/CODONS || die \ - "Installing the EMBOSS-indexed database failed." - done - fi -} diff --git a/sci-biology/cutg/cutg-149.ebuild b/sci-biology/cutg/cutg-149.ebuild deleted file mode 100644 index 783a1a5bd10a..000000000000 --- a/sci-biology/cutg/cutg-149.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2006 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-149.ebuild,v 1.6 2006/11/02 21:51:19 grobian Exp $ - -DESCRIPTION="Codon usage tables calculated from GenBank" -LICENSE="public-domain" -HOMEPAGE="http://www.kazusa.or.jp/codon/" -SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz" - -SLOT="0" -# Minimal build keeps only the indexed files (if applicable) and the -# documentation. The non-indexed database is not installed. -IUSE="emboss minimal" -KEYWORDS="amd64 ppc ppc64 x86" - -DEPEND="emboss? ( sci-biology/emboss )" - -S="${WORKDIR}" - -src_compile() { - if use emboss; then - mkdir CODONS - echo - einfo "Indexing CUTG for usage with EMBOSS." - EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \ - "Indexing CUTG failed." - echo - fi -} - -src_install() { - if ! use minimal; then - mkdir -p "${D}"usr/share/${PN} - mv *.codon *.spsum "${D}"/usr/share/${PN} || die \ - "Installing raw CUTG database failed." - fi - dodoc README - if use emboss; then - mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS - cd CODONS - for file in *; do - mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \ - "Installing the EMBOSS-indexed database failed." - done - fi -} diff --git a/sci-biology/cutg/files/digest-cutg-148 b/sci-biology/cutg/files/digest-cutg-148 deleted file mode 100644 index fe362594475d..000000000000 --- a/sci-biology/cutg/files/digest-cutg-148 +++ /dev/null @@ -1 +0,0 @@ -MD5 f96875e0c32a7ef1433c30ea28b0c612 CUTG.148.tar.gz 144554145 diff --git a/sci-biology/cutg/files/digest-cutg-149 b/sci-biology/cutg/files/digest-cutg-149 deleted file mode 100644 index 3ee791f163d6..000000000000 --- a/sci-biology/cutg/files/digest-cutg-149 +++ /dev/null @@ -1,3 +0,0 @@ -MD5 2714cdc70940bfe9ec88f436e159dd60 CUTG.149.tar.gz 152014260 -RMD160 e0448cb0980197a9b798b3f6943a88e239dc0f65 CUTG.149.tar.gz 152014260 -SHA256 dc5c30b0351d896725c674a68c1b20192533fc41f183131ec1d7443c12575439 CUTG.149.tar.gz 152014260 |