diff options
author | Justin Lecher <jlec@gentoo.org> | 2010-05-22 08:21:17 +0000 |
---|---|---|
committer | Justin Lecher <jlec@gentoo.org> | 2010-05-22 08:21:17 +0000 |
commit | 7544fffc4389f74018f21bb921dba63158754719 (patch) | |
tree | a44bd64b8ba3dc7fb5cc95f48332d7da00af0ce3 /sci-libs/cctbx | |
parent | Remove old. (diff) | |
download | historical-7544fffc4389f74018f21bb921dba63158754719.tar.gz historical-7544fffc4389f74018f21bb921dba63158754719.tar.bz2 historical-7544fffc4389f74018f21bb921dba63158754719.zip |
Version bump
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-libs/cctbx')
-rw-r--r-- | sci-libs/cctbx/ChangeLog | 8 | ||||
-rw-r--r-- | sci-libs/cctbx/Manifest | 14 | ||||
-rw-r--r-- | sci-libs/cctbx/cctbx-2010.03.29.2334.ebuild | 202 |
3 files changed, 222 insertions, 2 deletions
diff --git a/sci-libs/cctbx/ChangeLog b/sci-libs/cctbx/ChangeLog index ef5c47df8534..c6cb34171831 100644 --- a/sci-libs/cctbx/ChangeLog +++ b/sci-libs/cctbx/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-libs/cctbx # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.2 2010/02/14 18:14:34 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.3 2010/05/22 08:21:17 jlec Exp $ + +*cctbx-2010.03.29.2334 (22 May 2010) + + 22 May 2010; Justin Lecher <jlec@gentoo.org> + +cctbx-2010.03.29.2334.ebuild: + Version bump 14 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org> -cctbx-2009.11.01.0123.ebuild, +cctbx-2009.11.01.0123-r1.ebuild: diff --git a/sci-libs/cctbx/Manifest b/sci-libs/cctbx/Manifest index 42d5493e0c8e..058c6a2464a3 100644 --- a/sci-libs/cctbx/Manifest +++ b/sci-libs/cctbx/Manifest @@ -1,4 +1,16 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + DIST cctbx-2009.11.01.0123.tar.gz 14604079 RMD160 77cc84d4b9e35e7a87f807d8669efb939b2e82ce SHA1 7db71a62786b82f47999919a9411938b123d5b4d SHA256 31e7f79424360f963c6eae528a9d289db4b53c1f7fe4aa9de71201e9d14bc5af +DIST cctbx-2010.03.29.2334.tar.gz 15570372 RMD160 e543578dbe6568f5f8f80b3ce7a20b10e01193bc SHA1 1442dbd5d1ef3b91e718dce039a24fc1637104d3 SHA256 e1fae804caaf8593c7a3f32e4544046f4c00293063d9099721578cc8fbd17213 EBUILD cctbx-2009.11.01.0123-r1.ebuild 5819 RMD160 62b33e04a21926f2fa491cd71bcd87d3f9095308 SHA1 edf5d313ff7670476a6b7eb6d1ae2b9726808482 SHA256 dfcc1c86ea53c869232c192834392e30ca08a6b30b953b48e1fb9626c5e5ea09 -MISC ChangeLog 713 RMD160 17f8cbbc777b3867a1c534111ab62e4da655da93 SHA1 07e611b531e1cf400bbaf2b3c256e9547e7a4481 SHA256 104d54be699d6ec9ffc23b52cee50bf5ec503cdeeba3e9512933e376aa4f7d14 +EBUILD cctbx-2010.03.29.2334.ebuild 5890 RMD160 99db8f23cc00d0cf47113279d79f1676e7e01556 SHA1 d66e36045129ca550dee4bbb291cd72c83c63ab1 SHA256 023a594a5e1b4b70cf053a11efc7420885a368025770eeabffb1e01702b36261 +MISC ChangeLog 847 RMD160 8c654f3e9dfaa325a4c04bcbb2f210fdec37c389 SHA1 dbe4acc16197ac6a6766be0d95007413f602f45a SHA256 fedfb24046e071c5d8ac032b577922c263e34293891f4ff5ceebc0ffb11ed0ae MISC metadata.xml 767 RMD160 c2fc3bcc534e407e6066ee98beb6878d78a0f6e9 SHA1 a653677e160cf0726e1747b06b5d0cd95e51ac5f SHA256 ef36fc1a1d5d657ba67f88b303f08eef5a1a814d22a2091c07616dc16928e3fa +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.14 (GNU/Linux) + +iEYEARECAAYFAkv3lAIACgkQgAnW8HDreRYKaACfcE43wGXyd4OlOEgPgjO0L/E8 +TdUAn2S+3Yzqkk90yOUGx7CywLigRVTb +=Jpng +-----END PGP SIGNATURE----- diff --git a/sci-libs/cctbx/cctbx-2010.03.29.2334.ebuild b/sci-libs/cctbx/cctbx-2010.03.29.2334.ebuild new file mode 100644 index 000000000000..e5aca3644451 --- /dev/null +++ b/sci-libs/cctbx/cctbx-2010.03.29.2334.ebuild @@ -0,0 +1,202 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334.ebuild,v 1.1 2010/05/22 08:21:17 jlec Exp $ + +EAPI="3" +PYTHON_DEPEND="2" + +inherit eutils python toolchain-funcs + +MY_PV="${PV//./_}" + +DESCRIPTION="Computational Crystallography Toolbox" +HOMEPAGE="http://cctbx.sourceforge.net/" +SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz" + +LICENSE="cctbx-2.0" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="+minimal openmp threads" + +RDEPEND=" + >dev-libs/boost-1.39 + sci-libs/fftw + !minimal? ( + sci-chemistry/cns + sci-chemistry/shelx )" +DEPEND="${RDEPEND} + >=dev-util/scons-1.2" + +S="${WORKDIR}" +MY_S="${WORKDIR}"/cctbx_sources +MY_B="${WORKDIR}"/cctbx_build + +pkg_setup() { + if use openmp && + [[ $(tc-getCC)$ == *gcc* ]] && + ( [[ $(gcc-major-version)$(gcc-minor-version) -lt 42 ]] || + ! built_with_use sys-devel/gcc openmp ) + then + ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 " + ewarn "If you want to build ${PN} with OpenMP, abort now," + ewarn "and switch CC to an OpenMP capable compiler" + fi + python_set_active_version 2 +} + +src_prepare() { + local opts + local optsld + + rm -rf "${MY_S}/scons" + + mkdir -p "${MY_S}"/scons/src/ "${MY_S}/boost" + + ln -sf "${EPREFIX}"/usr/$(get_libdir)/scons-* "${MY_S}"/scons/src/engine || die + + # Get CXXFLAGS in format suitable for substitition into SConscript + for i in ${CXXFLAGS}; do + opts="${opts} \"${i}\"," + done + + # Strip off the last comma + opts=${opts%,} + + # Fix CXXFLAGS + sed -i \ + -e "s:\"-O3\", \"-ffast-math\":${opts}:g" \ + ${MY_S}/libtbx/SConscript + + # Get LDFLAGS in format suitable for substitition into SConscript + for i in ${LDFLAGS}; do + optsld="${optsld} \"${i}\"," + done + + optsld=${optsld%,} + + # Fix LDFLAGS which should be as-needed ready + sed -i \ + -e "s:\"-shared\":\"-shared\", ${optsld}:g" \ + ${MY_S}/libtbx/SConscript +} + +src_configure() { + local compiler + local myconf + + myconf="${MY_S}/libtbx/configure.py" + + # Get compiler in the right way + compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)') + myconf="${myconf} --compiler=${compiler}" + + # Precompiling python scripts. It is done in upstreams install script. + # Perhaps use python_mod_compile, but as this script works we should stick to it. + $(PYTHON -a) "${MY_S}/libtbx/command_line/py_compile_all.py" + + # Additional USE flag usage + check_use openmp + myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}" + + use threads && USEthreads="--enable-boost-threads" && \ + ewarn "If using boost threads openmp support is disabled" + + myconf="${myconf} ${USE_threads} --scan-boost" + + mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}" + cd "${MY_B}" + + myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper fable" + einfo "configuring with ${python} ${myconf}" + + $(PYTHON -a) ${myconf} \ + || die "configure failed" +} + +src_compile() { + local makeopts_exp + + cd "${MY_B}" + + makeopts_exp=${MAKEOPTS/j/j } + makeopts_exp=${makeopts_exp%-l[0-9]*} + + source setpaths_all.sh + + einfo "compiling with libtbx.scons ${makeopts_exp}" + libtbx.scons ${makeopts_exp} .|| die "make failed" +} + +src_test(){ + source "${MY_B}"/setpaths_all.sh + libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \ + libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \ + libtbx.python ${CCTBX_DIST}/run_tests.py ${MAKEOPTS_EXP} \ + || die "test failed" +} + +src_install(){ + # This is what Bill Scott does in the fink package. Do we need this as well? +# -e "s:prepend:append:g" \ + + find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \ + sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \ + -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g" \ + -i '{}' \; || die "Fail to correct path" + + ebegin "removing unnessary files" + rm -r "${S}"/cctbx_sources/{boost,scons} || die "failed to remove uneeded scons" + find "${S}" -type f -name "*conftest*" -delete || die "failed to remove uneeded *.o" + find "${S}" -type f -name "*.o" -delete || die "failed to remove uneeded *.o" + find "${S}" -type f -name "*.c" -delete || die "failed to remove uneeded *.c" + find "${S}" -type f -name "*.f" -delete || die "failed to remove uneeded *.c" + find "${S}" -type f -name "*.cpp" -delete || die "failed to remove uneeded *.cpp" + find "${S}" -type f -name "*.pyc" -delete || die "failed to remove uneeded *.pyc" + find "${S}" -type d -empty -delete || die + eend + + insinto /usr/$(get_libdir)/${PN} + doins -r cctbx_sources cctbx_build || die + +# fperms cannot handle wildcards + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/*sh && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/lib/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/array_family/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/serialization/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/error/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/fftpack/timing/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/scitbx/lbfgs/* && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/chiltbx/handle_test && \ + chmod 775 "${D}"/usr/$(get_libdir)/${PN}/cctbx_build/bin/* || \ + die + + insinto /etc/profile.d/ + newins "${MY_B}"/setpaths.sh 30cctbx.sh || die + newins "${MY_B}"/setpaths.csh 30cctbx.csh || die + + cat >> "${T}"/30cctbx <<- EOF + LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/cctbx_build/lib" + EOF + + doenvd "${T}"/30cctbx || die +} + +pkg_postinst () { + python_need_rebuild + python_mod_optimize /usr/$(get_libdir)/${PN}/cctbx_sources +} + +pkg_postrm () { + python_mod_cleanup /usr/$(get_libdir)/${PN}/cctbx_sources +} + +check_use() { + for var in $@; do + if use ${var}; then + printf -v "USE_$var" True + else + printf -v "USE_$var" False + fi + shift + done +} |