Drop old

Package-Manager: portage-2.2.0_alpha85/cvs/Linux x86_64

4 files changed, 11 insertions, 452 deletions

diff --git a/sci-chemistry/cns/ChangeLog b/sci-chemistry/cns/ChangeLog
index 45c1ca7b6e42..98278dcf83ee 100644
--- a/sci-chemistry/cns/ChangeLog
+++ b/sci-chemistry/cns/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/cns
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/ChangeLog,v 1.44 2012/02/04 15:01:15 tomka Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/ChangeLog,v 1.45 2012/02/06 15:46:32 jlec Exp $
+
+  06 Feb 2012; Justin Lecher <jlec@gentoo.org> -cns-1.2.1.ebuild,
+  -cns-1.2.1-r5.ebuild:
+  Drop old
 
   04 Feb 2012; Thomas Kahle <tomka@gentoo.org> cns-1.2.1-r6.ebuild:
   marked x86 per bug 391555
diff --git a/sci-chemistry/cns/Manifest b/sci-chemistry/cns/Manifest
index 3df8ac1ddf06..88bbf3eb69db 100644
--- a/sci-chemistry/cns/Manifest
+++ b/sci-chemistry/cns/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX 1.1-time-length-10.patch 443 RMD160 664ae29ccb2921954ffb14653e4560ed2bef1fa4 SHA1 ca1ddd1535c54bd541570eaf0187eb4c6f638e13 SHA256 73ca56b80588aabd513d6f5171db1217189899e04b5e460a55824eef13c5505a
 AUX 1.2-allow-unknown-architectures.patch 540 RMD160 559f16141025b3d102a316af79ba0ee195846774 SHA1 d168a0413aab5e84ea48f1de5e0a84bc7206fcc7 SHA256 47f398e4c534f01eb64a1c68d477d21a8371707a0977b900d9f2124d3d37243d
@@ -19,20 +19,17 @@ DIST cns_solve_1.1_basic_inputs.tar.gz 5049767 RMD160 eb5686a006d53cf269456eaecd
 DIST cns_solve_1.1_data.tar.gz 18770504 RMD160 a18470f31fa6213e817dadf3c3c56231ebce9e63 SHA1 3eaae5ecd1df14412083af8a31a6e3f7b14c4753 SHA256 da59213013b845ca357decfc11337c7dfdb3134bd012c710291c66e8febdbb37
 DIST cns_solve_1.1_test.tar.gz 2852870 RMD160 2f7e7b5ed4e603b2459944a8991829d1361315b5 SHA1 c50587cf3fdfcb1266d13dbd689a9b8b094fb681 SHA256 c5d049596cca4f6985b0b4997f4fa62345d2c111b8fab534918829ade1899a23
 DIST cns_solve_1.21_all-mp.tar.gz 32748040 RMD160 0da9c1858e858474a8798149b7692b9e097adc9e SHA1 3ba32a6622b55dfff397b6844e8b8a594124a482 SHA256 7ab464e20932eb024ba6378738da77a4a03642d63b0ca9772b612a7cf27baec1
-DIST cns_solve_1.21_all.tar.gz 32739912 RMD160 ab763373923264497d1ccb507cab23b2e1af9826 SHA1 93059805e14f0482cf58755daecc52cf97863215 SHA256 a581c6a0e9e5ffd45f025520959921d7ba91bb5d1e6569f1c81e709bb6f87c81
 DIST cns_solve_1.3_all.tar.gz 61221912 RMD160 6bce0ddeb04651223be46c0d94504d57da2b3e60 SHA1 51d069b8799d574b2d6124474ba8bcd1655f237e SHA256 9f7e38575d101870cf87a23a1bbaac378ed2cf60a9fada71868a10e4cbf6e1e2
 EBUILD cns-1.1.ebuild 3749 RMD160 e3e939dc4bfee9acace88181d4206417d0d40099 SHA1 44bd3184af25ac3713be2914a1c3292840479d4e SHA256 18971dfaf06932193bcc31accf8a84644bb0beac67b12d1a7c4b1b89891fa2ef
-EBUILD cns-1.2.1-r5.ebuild 6843 RMD160 44c3031a036837d687989af3861dc55218ce00d7 SHA1 23c01e04d76e63831ca529694a207de33114b25e SHA256 79ad99649fcda855569f467f78ab03c9def972dd0d3b485e3ae432dd0ccd0b06
 EBUILD cns-1.2.1-r6.ebuild 6861 RMD160 55c955df92c42c12189031bd4179f059a8cadfe8 SHA1 1394acd3917d0459d57568af2c2de4f04dc5f258 SHA256 9b05ee4e7db37d1bf2846f671c9740224e1ed3ba21004d4bc01b40202f3620b2
 EBUILD cns-1.2.1-r7.ebuild 6862 RMD160 8a8dd57c652f21fd44079a2af6774664b6bc3efb SHA1 32b6c3c207be6f14d4cbdfd9936b843147b3d104 SHA256 33b87c54cebdaa1159937c0ec0c8360c4c10a45344e803a51020d73008c013ae
-EBUILD cns-1.2.1.ebuild 5591 RMD160 f06d7b6913492eeac5e1c8cb4cdd26344a82c7b9 SHA1 37922ec85c0c872c81a65a704d9bd97659c6a2f8 SHA256 7c90b8357889c2730f40ae556608763a9e27696b5f485a8f4ed9a154d3181f8d
 EBUILD cns-1.3_p5.ebuild 6098 RMD160 1f8ae90ce32108de0acfb4f4aaa3d52c7096958a SHA1 8fb8c381acb5f5ea3584d261dea919c848ef4949 SHA256 fef533bbce218d5f3800648def3a8226c7d3611df127c338401ead0021a5c66a
-MISC ChangeLog 7835 RMD160 3615489171e54ad5d42e647d12dd34a327f266e5 SHA1 8cca5b58e21ceb1d538c5b77aa5015b000e0eefa SHA256 853acc91d9b273627353760389e7db621ae8a46efccff1054d294f33c1591cbf
+MISC ChangeLog 7936 RMD160 7afb5adc21263d989cba5523d03367a8841a1604 SHA1 e8c6db8959b71ccc0fc82d9f53eb9f8956e93f6e SHA256 6d89850d5de64a9fdc42f9c0c6ec87a8594bee0e8b4f92e64e48b87d4967cee2
 MISC metadata.xml 309 RMD160 795b309a43b2deab1061f07c27ac092a290fc4c7 SHA1 3242a8d4127632b627277254eeae9a3ec98e2107 SHA256 b324f51d14838e35c102e299cbb7b5c3d777c91ffdbe011fbc085a117226b189
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
-iF4EAREIAAYFAk8tSEoACgkQodBTJSDyo67zNAD/WRDJrQpYe/T0tgCRHxvo9OAw
-4PUFh5RiS940iixfnQQA/iVa1nAeGFNK4iJ4k+aFmVD19m33WhbTurI7M2UEe0El
-=ASkX
+iEYEAREKAAYFAk8v9d0ACgkQgAnW8HDreRa03gCgxTZ7LiucjFet8BigfU86B6IZ
+m8MAoI4x1doatSdC+O0F8wLmwUrM/ECk
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diff --git a/sci-chemistry/cns/cns-1.2.1-r5.ebuild b/sci-chemistry/cns/cns-1.2.1-r5.ebuild
deleted file mode 100644
index e62a8e66cf1f..000000000000
--- a/sci-chemistry/cns/cns-1.2.1-r5.ebuild
+++ /dev/null
@@ -1,242 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/cns-1.2.1-r5.ebuild,v 1.11 2011/06/21 16:05:16 jlec Exp $
-
-EAPI=3
-
-inherit eutils fortran-2 toolchain-funcs versionator flag-o-matic
-
-MY_PN="${PN}_solve"
-MY_PV="$(delete_version_separator 2)"
-MY_P="${MY_PN}_${MY_PV}"
-
-DESCRIPTION="Crystallography and NMR System"
-HOMEPAGE="http://cns.csb.yale.edu/"
-SRC_URI="
-	${MY_P}_all-mp.tar.gz
-	aria? ( aria2.3.1.tar.gz )"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="aria openmp"
-
-RDEPEND="
-	virtual/fortran
-	app-shells/tcsh"
-DEPEND="${RDEPEND}"
-
-FORTRAN_NEED_OPENMP=1
-
-S="${WORKDIR}/${MY_P}"
-
-RESTRICT="fetch"
-
-pkg_nofetch() {
-	elog "Fill out the form at http://cns.csb.yale.edu/cns_request/"
-	use aria && elog "and http://aria.pasteur.fr/"
-	elog "and place these files:"
-	elog ${A}
-	elog "in ${DISTDIR}."
-}
-
-get_fcomp() {
-	case $(tc-getFC) in
-		*gfortran* )
-			FCOMP="gfortran" ;;
-		ifort )
-			FCOMP="ifc" ;;
-		* )
-			FCOMP=$(tc-getFC) ;;
-	esac
-}
-
-pkg_setup() {
-	fortran-2_pkg_setup
-	get_fcomp
-}
-
-get_bitness() {
-	echo > "${T}"/test.c
-	$(tc-getCC) ${CFLAGS} -c "${T}"/test.c -o "${T}"/test.o
-	case $(file "${T}"/test.o) in
-		*64-bit*|*ppc64*|*x86_64*) export _bitness="64";;
-		*32-bit*|*ppc*|*i386*) export _bitness="32";;
-		*) die "Failed to detect whether your arch is 64bits or 32bits, disable distcc if you're using it, please";;
-	esac
-}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${PV}-gentoo.patch \
-		"${FILESDIR}"/${PV}-parallel.patch
-
-	get_bitness
-
-	if use aria; then
-	pushd "${WORKDIR}"/aria* >& /dev/null
-		# Update the cns sources in aria for version 1.2.1
-		epatch "${FILESDIR}"/1.2.1-aria2.3.patch
-
-		# Update the code with aria specific things
-		cp -rf cns/src/* "${S}"/source/
-	popd >& /dev/null
-	fi
-
-	# the code uses Intel-compiler-specific directives
-	if [[ $(tc-getFC) =~ gfortran ]]; then
-		epatch "${FILESDIR}"/${PV}-allow-gcc-openmp.patch
-		use openmp && \
-			append-flags -fopenmp && append-ldflags -fopenmp
-		COMP="gfortran"
-		[[ ${_bitness} == 64 ]] && \
-			append-fflags -fdefault-integer-8
-	elif [[ $(tc-getFC) == if* ]]; then
-		epatch "${FILESDIR}"/${PV}-ifort.patch
-		use openmp && \
-			append-flags -openmp && append-ldflags -openmp
-		COMP="ifort"
-		[[ ${_bitness} == 64 ]] && append-fflags -i8
-	fi
-
-	[[ ${_bitness} == 64 ]] && \
-		append-cflags "-DINTEGER='long long int'"
-
-	# Set up location for the build directory
-	# Uses obsolete `sort` syntax, so we set _POSIX2_VERSION
-	cp "${FILESDIR}"/cns_solve_env_sh "${T}"/
-	sed -i \
-		-e "s:_CNSsolve_location_:${S}:g" \
-		-e "17 s:\(.*\):\1\nsetenv _POSIX2_VERSION 199209:g" \
-		"${S}"/cns_solve_env
-	sed -i \
-		-e "s:_CNSsolve_location_:${S}:g" \
-		-e "17 s:\(.*\):\1\nexport _POSIX2_VERSION; _POSIX2_VERSION=199209:g" \
-		"${T}"/cns_solve_env_sh
-
-	einfo "Fixing shebangs..."
-	find "${S}" -type f \
-		-exec sed "s:/bin/csh:${EPREFIX}/bin/csh:g" -i '{}' \; || die
-}
-
-src_compile() {
-	local GLOBALS
-	local MALIGN
-	if [[ $(tc-getFC) =~ g77 ]]; then
-		GLOBALS="-fno-globals"
-		MALIGN='\$(CNS_MALIGN_I86)'
-	fi
-
-	# Set up the compiler to use
-	pushd instlib/machine/unsupported/g77-unix 2>/dev/null
-	ln -s Makefile.header Makefile.header.${FCOMP} || die
-	popd 2>/dev/null
-
-	# make install really means build, since it's expected to be used in-place
-	# -j1 doesn't mean we do no respect MAKEOPTS!
-	emake -j1 \
-		CC="$(tc-getCC)" \
-		F77=$(tc-getFC) \
-		LD=$(tc-getFC) \
-		CCFLAGS="${CFLAGS} -DCNS_ARCH_TYPE_\$(CNS_ARCH_TYPE) \$(EXT_CCFLAGS)" \
-		LDFLAGS="${LDFLAGS}" \
-		F77OPT="${FFLAGS:- -O2} ${MALIGN}" \
-		F77STD="${GLOBALS}" \
-		OMPLIB="${OMPLIB}" \
-		compiler="${COMP}" \
-		install \
-		|| die "emake failed"
-}
-
-src_test() {
-	# We need to force on g77 manually, because we can't get aliases working
-	# when we source in a -c
-	einfo "Running tests ..."
-	sh -c \
-		"export CNS_G77=ON; source ${T}/cns_solve_env_sh; make run_tests" \
-		|| die "tests failed"
-	einfo "Displaying test results ..."
-	cat "${S}"/*_g77/test/*.diff-test
-}
-
-src_install() {
-	# Install to locations resembling FHS
-	sed -i \
-		-e "s:${S}:usr:g" \
-		-e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_ROOT ${EPREFIX}/usr:g" \
-		-e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_DATA \$CNS_ROOT/share/cns:g" \
-		-e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_DOC \$CNS_ROOT/share/doc/${PF}:g" \
-		-e "s:CNS_LIB \$CNS_SOLVE/libraries:CNS_LIB \$CNS_DATA/libraries:g" \
-		-e "s:CNS_MODULE \$CNS_SOLVE/modules:CNS_MODULE \$CNS_DATA/modules:g" \
-		-e "s:CNS_HELPLIB \$CNS_SOLVE/helplib:CNS_HELPLIB \$CNS_DATA/helplib:g" \
-		-e "s:\$CNS_SOLVE/bin/cns_info:\$CNS_DATA/cns_info:g" \
-		-e "/^g77on/d" \
-		"${S}"/cns_solve_env
-	# I don't entirely understand why the sh version requires a leading /
-	# for CNS_SOLVE and CNS_ROOT, but it does
-	sed -i \
-		-e "s:${S}:/usr:g" \
-		-e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_ROOT=${EPREFIX}/usr:g" \
-		-e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_DATA=\$CNS_ROOT/share/cns:g" \
-		-e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_DOC=\$CNS_ROOT/share/doc/${PF}:g" \
-		-e "s:CNS_LIB=\$CNS_SOLVE/libraries:CNS_LIB=\$CNS_DATA/libraries:g" \
-		-e "s:CNS_MODULE=\$CNS_SOLVE/modules:CNS_MODULE=\$CNS_DATA/modules:g" \
-		-e "s:CNS_HELPLIB=\$CNS_SOLVE/helplib:CNS_HELPLIB=\$CNS_DATA/helplib:g" \
-		-e "s:\$CNS_SOLVE/bin/cns_info:\$CNS_DATA/cns_info:g" \
-		-e "/^g77on/d" \
-		"${T}"/cns_solve_env_sh
-
-	# Get rid of setup stuff we don't need in the installed script
-	sed -i \
-		-e "83,$ d" \
-		-e "37,46 d" \
-		"${S}"/cns_solve_env
-	sed -i \
-		-e "84,$ d" \
-		-e "39,50 d" \
-		"${T}"/cns_solve_env_sh
-
-	newbin "${S}"/*linux*/bin/cns_solve* cns_solve \
-		|| die "install cns_solve failed"
-
-	# Can be run by either cns_solve or cns
-	dosym cns_solve /usr/bin/cns
-
-	# Don't want to install this
-	rm -f "${S}"/*linux*/utils/Makefile
-
-	dobin "${S}"/*linux*/utils/* || die "install utils failed"
-
-	sed -i \
-		-e "s:\$CNS_SOLVE/doc/:\$CNS_SOLVE/share/doc/${PF}/:g" \
-		"${S}"/bin/cns_web || die
-
-	dobin "${S}"/bin/cns_{edit,header,transfer,web} || die "install bin failed"
-
-	insinto /usr/share/cns
-	doins -r "${S}"/libraries "${S}"/modules "${S}"/helplib || die
-	doins "${S}"/bin/cns_info || die
-
-	insinto /etc/profile.d
-	newins "${S}"/cns_solve_env cns_solve_env.csh || die
-	newins "${T}"/cns_solve_env_sh cns_solve_env.sh || die
-
-	dohtml \
-		-A iq,cgi,csh,cv,def,fm,gif,hkl,inp,jpeg,lib,link,list,mask,mtf,param,pdb,pdf,pl,ps,sc,sca,sdb,seq,tbl,top \
-		-f all_cns_info_template,omac,def \
-		-r doc/html/* || die
-	# Conflits with app-text/dos2unix
-	rm -f "${D}"/usr/bin/dos2unix
-}
-
-pkg_info() {
-	if use openmp; then
-		elog "Set OMP_NUM_THREADS to the number of threads you want."
-		elog "If you get segfaults on large structures, set the GOMP_STACKSIZE"
-		elog "variable if using gcc (16384 should be good)."
-	fi
-}
-
-pkg_postinst() {
-	pkg_info
-}
diff --git a/sci-chemistry/cns/cns-1.2.1.ebuild b/sci-chemistry/cns/cns-1.2.1.ebuild
deleted file mode 100644
index 16ace3511fe3..000000000000
--- a/sci-chemistry/cns/cns-1.2.1.ebuild
+++ /dev/null
@@ -1,200 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/cns-1.2.1.ebuild,v 1.13 2011/06/21 16:05:16 jlec Exp $
-
-inherit eutils fortran-2 toolchain-funcs versionator flag-o-matic
-
-MY_PN="${PN}_solve"
-MY_PV="$(delete_version_separator 2)"
-MY_P="${MY_PN}_${MY_PV}"
-
-DESCRIPTION="Crystallography and NMR System"
-HOMEPAGE="http://cns.csb.yale.edu/"
-SRC_URI="
-	!openmp? ( ${MY_P}_all.tar.gz )
-	openmp? ( ${MY_P}_all-mp.tar.gz )"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="amd64 ~ppc ~x86"
-IUSE="openmp"
-
-RDEPEND="
-	virtual/fortran
-	app-shells/tcsh"
-DEPEND="${RDEPEND}"
-
-FORTRAN_NEED_OPENMP=1
-
-S="${WORKDIR}/${MY_P}"
-
-RESTRICT="fetch"
-
-pkg_nofetch() {
-	elog "Fill out the form at http://cns.csb.yale.edu/cns_request/"
-	elog "and place these files:"
-	elog ${A}
-	elog "in ${DISTDIR}."
-}
-
-get_fcomp() {
-	case $(tc-getFC) in
-		*gfortran* )
-			FCOMP="gfortran" ;;
-		ifort )
-			FCOMP="ifc" ;;
-		* )
-			FCOMP=$(tc-getFC) ;;
-	esac
-}
-
-pkg_setup() {
-	fortran-2_pkg_setup
-	get_fcomp
-}
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	use openmp && append-fflags -fopenmp && \
-		append-ldflags -fopenmp
-
-	# Someone already did the same in the openmp version, apparently
-	use openmp || epatch "${FILESDIR}"/1.2-allow-unknown-architectures.patch
-
-	# the code uses Intel-compiler-specific directives
-	use openmp && epatch "${FILESDIR}"/${PV}-allow-gcc-openmp.patch
-
-	# Set up location for the build directory
-	# Uses obsolete `sort` syntax, so we set _POSIX2_VERSION
-	cp "${FILESDIR}"/cns_solve_env_sh "${T}"/
-	sed -i \
-		-e "s:_CNSsolve_location_:${S}:g" \
-		-e "17 s:\(.*\):\1\nsetenv _POSIX2_VERSION 199209:g" \
-		"${S}"/cns_solve_env
-	sed -i \
-		-e "s:_CNSsolve_location_:${S}:g" \
-		-e "17 s:\(.*\):\1\nexport _POSIX2_VERSION; _POSIX2_VERSION=199209:g" \
-		"${T}"/cns_solve_env_sh
-}
-
-src_compile() {
-	local GLOBALS
-	local MALIGN=
-	if [[ $(tc-getFC) =~ g77 ]]; then
-		GLOBALS="-fno-globals"
-		MALIGN='\$(CNS_MALIGN_I86)'
-	fi
-
-	# Set up the compiler to use
-	pushd instlib/machine/unsupported/g77-unix 2>/dev/null
-	ln -s Makefile.header Makefile.header.${FCOMP} || die
-	popd 2>/dev/null
-
-	# make install really means build, since it's expected to be used in-place
-	emake \
-		CC="$(tc-getCC)" \
-		F77=$(tc-getFC) \
-		LD=$(tc-getFC) \
-		CCFLAGS="${CFLAGS} -DCNS_ARCH_TYPE_\$(CNS_ARCH_TYPE) \$(EXT_CCFLAGS)" \
-		LDFLAGS="${LDFLAGS}" \
-		F77OPT="${FFLAGS:- -O2} ${MALIGN}" \
-		F77STD="${GLOBALS}" \
-		g77install \
-		|| die "emake failed"
-}
-
-src_test() {
-	# We need to force on g77 manually, because we can't get aliases working
-	# when we source in a -c
-	einfo "Running tests ..."
-	sh -c \
-		"export CNS_G77=ON; source .cns_solve_env_sh; make run_tests" \
-		|| die "tests failed"
-	einfo "Displaying test results ..."
-	cat "${S}"/*_g77/test/*.diff-test
-}
-
-src_install() {
-	# Install to locations resembling FHS
-	sed -i \
-		-e "s:${S}:usr:g" \
-		-e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_ROOT usr:g" \
-		-e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_DATA \$CNS_ROOT/share/data:g" \
-		-e "s:^\(setenv CNS_SOLVE.*\):\1\nsetenv CNS_DOC \$CNS_ROOT/share/doc/${PF}:g" \
-		-e "s:CNS_LIB \$CNS_SOLVE/libraries:CNS_LIB \$CNS_DATA/libraries:g" \
-		-e "s:CNS_MODULE \$CNS_SOLVE/modules:CNS_MODULE \$CNS_DATA/modules:g" \
-		-e "s:CNS_HELPLIB \$CNS_SOLVE/helplib:CNS_HELPLIB \$CNS_DATA/helplib:g" \
-		-e "s:\$CNS_SOLVE/bin/cns_info:\$CNS_DATA/cns_info:g" \
-		-e "/^g77on/d" \
-		"${S}"/cns_solve_env
-	# I don't entirely understand why the sh version requires a leading /
-	# for CNS_SOLVE and CNS_ROOT, but it does
-	sed -i \
-		-e "s:${S}:/usr:g" \
-		-e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_ROOT=/usr:g" \
-		-e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_DATA=\$CNS_ROOT/share/cns:g" \
-		-e "s:^\(^[[:space:]]*CNS_SOLVE=.*\):\1\nexport CNS_DOC=\$CNS_ROOT/share/doc/${PF}:g" \
-		-e "s:CNS_LIB=\$CNS_SOLVE/libraries:CNS_LIB=\$CNS_DATA/libraries:g" \
-		-e "s:CNS_MODULE=\$CNS_SOLVE/modules:CNS_MODULE=\$CNS_DATA/modules:g" \
-		-e "s:CNS_HELPLIB=\$CNS_SOLVE/helplib:CNS_HELPLIB=\$CNS_DATA/helplib:g" \
-		-e "s:\$CNS_SOLVE/bin/cns_info:\$CNS_DATA/cns_info:g" \
-		-e "/^g77on/d" \
-		"${T}"/cns_solve_env_sh
-
-	# Get rid of setup stuff we don't need in the installed script
-	sed -i \
-		-e "83,$ d" \
-		-e "37,46 d" \
-		"${S}"/cns_solve_env
-	sed -i \
-		-e "84,$ d" \
-		-e "39,50 d" \
-		"${T}"/cns_solve_env_sh
-
-	newbin "${S}"/*_g77/bin/cns_solve* cns_solve \
-		|| die "install cns_solve failed"
-
-	# Can be run by either cns_solve or cns
-	dosym cns_solve /usr/bin/cns
-
-	# Don't want to install this
-	rm -f "${S}"/*_g77/utils/Makefile
-
-	dobin "${S}"/*_g77/utils/* || die "install utils failed"
-
-	sed -i \
-		-e "s:\$CNS_SOLVE/doc/:\$CNS_SOLVE/share/doc/${PF}/:g" \
-		"${S}"/bin/cns_web
-
-	dobin "${S}"/bin/cns_{edit,header,transfer,web} || die "install bin failed"
-
-	insinto /usr/share/cns
-	doins -r "${S}"/libraries "${S}"/modules "${S}"/helplib
-	doins "${S}"/bin/cns_info
-
-	insinto /etc/profile.d
-	newins "${S}"/cns_solve_env cns_solve_env.csh
-	newins "${T}"/cns_solve_env_sh cns_solve_env.sh
-
-	dohtml \
-		-A iq,cgi,csh,cv,def,fm,gif,hkl,inp,jpeg,lib,link,list,mask,mtf,param,pdb,pdf,pl,ps,sc,sca,sdb,seq,tbl,top \
-		-f all_cns_info_template,omac,def \
-		-r doc/html/*
-	# Conflits with app-text/dos2unix
-	rm -f "${D}"/usr/bin/dos2unix
-}
-
-pkg_info() {
-	if use openmp; then
-		elog "Set OMP_NUM_THREADS to the number of threads you want."
-		elog "If you get segfaults on large structures, set the GOMP_STACKSIZE"
-		elog "variable if using gcc (16384 should be good). Also run"
-		elog "ulimit -s 16384."
-	fi
-}
-
-pkg_postinst() {
-	pkg_info
-}