Version bump.

Package-Manager: portage-2.1.5_rc6

3 files changed, 66 insertions, 3 deletions

diff --git a/sci-biology/vienna-rna/ChangeLog b/sci-biology/vienna-rna/ChangeLog
index 167fc9e2791d..d68bf4a80d64 100644
--- a/sci-biology/vienna-rna/ChangeLog
+++ b/sci-biology/vienna-rna/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/vienna-rna
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.14 2007/11/24 15:10:04 markusle Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.15 2008/05/01 13:13:57 markusle Exp $
+
+*vienna-rna-1.7.0 (01 May 2008)
+
+  01 May 2008; Markus Dittrich <markusle@gentoo.org>
+  +vienna-rna-1.7.0.ebuild:
+  Version bump.
 
 *vienna-rna-1.6.5 (24 Nov 2007)
 
diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest
index 5ed1e89b1388..265b1681a9f7 100644
--- a/sci-biology/vienna-rna/Manifest
+++ b/sci-biology/vienna-rna/Manifest
@@ -2,8 +2,10 @@ AUX vienna-rna-1.6.5-c-fixes.patch 728 RMD160 5f427bb976200f58599b1878ca7273844b
 DIST ViennaRNA-1.4.tar.gz 483047 RMD160 31ce5f6e3f1adbd0c8e4759c243764523828a258 SHA1 fde493bfeeb443cb427bbe58b0d4daa446771ccf SHA256 8021ebe40d4fdf609fc9ad9aa7525736f69146666b6222d78d1016c20707522f
 DIST ViennaRNA-1.6.1.tar.gz 1149127 RMD160 37e4719e7ca03ced354976fa83f38d5f96776531 SHA1 afb35731c39893b17a21653a96ba5b3e39340934 SHA256 8036b6a562ec898dab4144cb5f18b42ff7c4290875572d05e7059b1ca2d5ddfd
 DIST ViennaRNA-1.6.5.tar.gz 1214312 RMD160 671f9ebd26c1c11db4f19821daea89feac8f2df2 SHA1 12a46718c684bb4f888b41df52a3a8009715ff10 SHA256 70a7bef5d6e67d31ee88089603c18b95e3a544880cddc56e5a04da28cdaa84b9
+DIST ViennaRNA-1.7.tar.gz 1249073 RMD160 7f07ae00f0efbd992f7d7dfdb3c215dde7835355 SHA1 3856b4d18e09bc640e7e0aa344346efbe31b2421 SHA256 b1df6ec6c68ecaf5256cb0a3fbb3cbee4dc84138254499f3c471ca5afbb82c58
 EBUILD vienna-rna-1.4.ebuild 2411 RMD160 df875d116e09cb23ae6fbda5d59bf12202584aa2 SHA1 7cbe01e26e40d1fb92d6bece04f1ceba543c42b8 SHA256 db9071a8513e921026a11fcb1a57751dfdece8448e42f07d4b702af1736bf7d6
 EBUILD vienna-rna-1.6.1.ebuild 1587 RMD160 563cb491bc5c71347eaacd0d093924fbba79afa6 SHA1 5d30247bf97f0cc2197993673dc1d813f27b37e1 SHA256 04308a39ccf800a738a899ff93b1592532dab2886405b90b99815c5e9155bead
 EBUILD vienna-rna-1.6.5.ebuild 1744 RMD160 1b8d7dc72c02d815a21fc1398865c1d936afaf05 SHA1 e05f78a86fd59fcb13c3e57fe462b93bc6c39b16 SHA256 6e5b9eff1e28e5a0ec47886d743abd1b79909cd2331f87daee75f66dddd9925e
-MISC ChangeLog 2289 RMD160 352226578ec3e2d6fadaeefe426ebb613ecc8e9f SHA1 fa7a49ddd07a8e280b9eab911c608d31ec3bad96 SHA256 04e84f5d262fa2c1438f7199cb3c6c1c8737f9da9cf09c6f24ce698df5ced095
+EBUILD vienna-rna-1.7.0.ebuild 1795 RMD160 35771c487766583375c59d513bd3bac59e2aaaa6 SHA1 01da384c1830df80f232c4e361b96a28b77acc81 SHA256 4a2044beeb9070f2c415c491b94eadb74972db2987806e524da1c7927686c499
+MISC ChangeLog 2420 RMD160 d399fa5a92415b32d438a63f28407944e3074c6e SHA1 094972a27d5cea1f0eeafea13601c3711ab0ea2a SHA256 8e59d9c4a8333026d36d74725ebc5d07e69a515d0f6b8ba99a31342211eed191
 MISC metadata.xml 1228 RMD160 8db8df2ec48d6a7e8dd4c592f7f4a9c7f8810cf9 SHA1 e46645ad44f1236a471a0ba79e08e4f6fe752dcb SHA256 7c558ba2568a5ec64654465c4c45784a32c4dccd6adf33518cf1f3daca2acd16
diff --git a/sci-biology/vienna-rna/vienna-rna-1.7.0.ebuild b/sci-biology/vienna-rna/vienna-rna-1.7.0.ebuild
new file mode 100644
index 000000000000..98d5be613dc1
--- /dev/null
+++ b/sci-biology/vienna-rna/vienna-rna-1.7.0.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.0.ebuild,v 1.1 2008/05/01 13:13:57 markusle Exp $
+
+inherit toolchain-funcs multilib eutils versionator
+
+MY_PV=$(get_version_component_range 1-2)
+
+DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison"
+LICENSE="vienna-rna"
+HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA"
+SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${MY_PV}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86 ~ppc"
+
+DEPEND="dev-lang/perl
+	media-libs/gd"
+
+S="${WORKDIR}/ViennaRNA-${MY_PV}"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	epatch "${FILESDIR}"/${PN}-1.6.5-c-fixes.patch
+}
+
+src_compile() {
+	econf --with-cluster || die "Configuration failed."
+	sed -e "s:LIBDIR = /usr/lib:LIBDIR = ${D}/usr/$(get_libdir):" \
+		-e "s:INCDIR = /usr/include:INCDIR = ${D}/usr/include:" \
+		-i RNAforester/g2-0.70/Makefile \
+			|| die "Failed patching RNAForester build system."
+	emake || die "Compilation failed."
+
+	cd "${S}"/Readseq
+	sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \
+		-i Makefile || die "Failed patching readseq Makefile."
+	make || die "Failed to compile readseq."
+	# TODO: Add (optional?) support for the NCBI toolkit.
+}
+
+src_install() {
+	make install DESTDIR="${D}" || die "Installation failed."
+	dodoc AUTHORS ChangeLog NEWS README THANKS \
+		|| die "Failed to install documentation."
+	newbin Readseq/readseq readseq-vienna \
+		|| die "Installing readseq failed."
+	dodoc Readseq/Readseq.help || die \
+		"Readseq Documentation installation failed."
+	newdoc Readseq/Readme README.readseq && \
+		newdoc Readseq/Formats Formats.readseq \
+		|| die "Installing readseq Readme failed."
+}