Bump.

Package-Manager: portage-2.1_pre5-r2

4 files changed, 90 insertions, 6 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index ca1dfe82adb0..bb9060a083ae 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/t-coffee
-# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.12 2005/12/08 19:52:39 ribosome Exp $
+# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.13 2006/03/07 21:41:22 spyderous Exp $
+
+*t-coffee-3.84 (07 Mar 2006)
+
+  07 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>;
+  +t-coffee-3.84.ebuild:
+  Bump.
 
   08 Dec 2005; Olivier Fisette <ribosome@gentoo.org> -t-coffee-3.18.ebuild:
   Pruning old version.
diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest
index ba99692760c7..b754f4ffe62c 100644
--- a/sci-biology/t-coffee/Manifest
+++ b/sci-biology/t-coffee/Manifest
@@ -1,6 +1,24 @@
-MD5 6fb318682c83d5a0f5d956f5272a66c6 t-coffee-2.66.ebuild 1142
-MD5 14f801a8843f6bd12714937cd1b623b2 t-coffee-3.27.ebuild 1735
-MD5 a8e10e03e808c4708b17b4568bd52f10 ChangeLog 1916
-MD5 0bbfd32ca9864625c55ab6460dbbd963 metadata.xml 755
+MD5 c98b69307acd74173b921a2370a7b6bd ChangeLog 2036
+RMD160 1d4704a8d0557b33ac1b308af3bd9451ee67a27d ChangeLog 2036
+SHA256 2fe1d37fbcace46053445deb075a3c353a7d97872be7adf6c08cda4f8514f275 ChangeLog 2036
 MD5 ed78ff61d489ff54debcffde53dca64e files/digest-t-coffee-2.66 87
+RMD160 8b79de0ebb8aa0ef3599d00ec4d121b851d45883 files/digest-t-coffee-2.66 87
+SHA256 eb34ae433647fe37de02beb57d10d0918d7c956ef0a936079911acf38971429b files/digest-t-coffee-2.66 87
 MD5 7a6ff5d9984814b20d79e15e0e300b63 files/digest-t-coffee-3.27 87
+RMD160 3d0df800530b88e403ce391f9bc5beb5436cdeca files/digest-t-coffee-3.27 87
+SHA256 8a3e705c3ca5372b211cb0c6fb9c9e6ca1ca5053886f80d539cb6c37a0342bc6 files/digest-t-coffee-3.27 87
+MD5 8663d9c02294b9417b3c82f0e9d3a570 files/digest-t-coffee-3.84 307
+RMD160 e234918666e5de1a15e6a0ccb831d7597608a08a files/digest-t-coffee-3.84 307
+SHA256 6717825503db3a5cc4d64a2506dc81d25498dcc2625f37eb64c8df50c25462f9 files/digest-t-coffee-3.84 307
+MD5 0bbfd32ca9864625c55ab6460dbbd963 metadata.xml 755
+RMD160 ef787b368ef20594ac1af412ab7ded9bd853c90d metadata.xml 755
+SHA256 c8669c3b6b58e9abbb36358b6577c76d595fab96fed1410c41694cff7cbe780a metadata.xml 755
+MD5 6fb318682c83d5a0f5d956f5272a66c6 t-coffee-2.66.ebuild 1142
+RMD160 489854fff502d68e230d5e2bc466a77d6bbad143 t-coffee-2.66.ebuild 1142
+SHA256 b4797a21fb58136b596412e55260aad568541aaef94de015c1c79048e032fa39 t-coffee-2.66.ebuild 1142
+MD5 14f801a8843f6bd12714937cd1b623b2 t-coffee-3.27.ebuild 1735
+RMD160 c1e6a17b069edfb77ceac44cc1740d7083c799e2 t-coffee-3.27.ebuild 1735
+SHA256 97324873d7ce74b289af6bce8f9e7c289a7667a768a7b7329adda475b1161ce9 t-coffee-3.27.ebuild 1735
+MD5 1c8061be4546124e96924f91ceb7c4d1 t-coffee-3.84.ebuild 1736
+RMD160 b9d825b9c3e9323ef38af0536c15a90578cca2e2 t-coffee-3.84.ebuild 1736
+SHA256 0c1e14aa5c9d894446e7599d33cfb9c55c319e1c02f2ece85ebc2f8995d52404 t-coffee-3.84.ebuild 1736
diff --git a/sci-biology/t-coffee/files/digest-t-coffee-3.84 b/sci-biology/t-coffee/files/digest-t-coffee-3.84
new file mode 100644
index 000000000000..bc927afd27fc
--- /dev/null
+++ b/sci-biology/t-coffee/files/digest-t-coffee-3.84
@@ -0,0 +1,3 @@
+MD5 f8f74db4132573b0ec8790e64c4cda4c T-COFFEE_distribution_Version_3.84.tar.gz 1625217
+RMD160 cda295fd0c2c432c8f802739a3748fcb01f40389 T-COFFEE_distribution_Version_3.84.tar.gz 1625217
+SHA256 1c062fe67b1817570fdce8f57999ce637863cc91b4feb91053ef805cc3f48eab T-COFFEE_distribution_Version_3.84.tar.gz 1625217
diff --git a/sci-biology/t-coffee/t-coffee-3.84.ebuild b/sci-biology/t-coffee/t-coffee-3.84.ebuild
new file mode 100644
index 000000000000..100840872c61
--- /dev/null
+++ b/sci-biology/t-coffee/t-coffee-3.84.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-3.84.ebuild,v 1.1 2006/03/07 21:41:22 spyderous Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="A multiple sequence alignment package"
+LICENSE="t-coffee"
+HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
+SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~ppc ~x86"
+
+RESTRICT="nomirror"
+
+DEPEND="sci-biology/clustalw"
+
+TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
+S="${TCDIR}/t_coffee_source"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	sed -e "s/CC	= cc/CC	= $(tc-getCC) ${CFLAGS}/" -i makefile || die \
+		"Failed to patch makefile."
+}
+
+die_compile() {
+	echo
+	eerror "If you experience an internal compiler error (consult the above"
+	eerror "messages), try compiling t-coffee using very modest compiler flags."
+	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
+	die "Compilation failed"
+}
+
+src_compile() {
+	make all || die_compile
+}
+
+src_install() {
+	cd "${TCDIR}"/bin
+	dobin t_coffee || die "Failed to install program."
+	insinto /usr/share/${PN}/lib/html
+	doins ${TCDIR}/html/* || die "Failed to install HTML documentation,"
+
+	dodoc ${TCDIR}/doc/README4T-COFFEE || die \
+		"Failed to install basic documentation."
+	insinto /usr/share/doc/${PF}
+	doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf} || die \
+		"Failed to install manuals and articles."
+	doins ${TCDIR}/doc/*.txt || die "Failed to install documentation."
+
+	insinto /usr/share/${PN}/example
+	doins ${TCDIR}/example/* || die "Failed to install example files."
+}