New upstream version/package for EMBASSY 6.0.1.

Package-Manager: portage-2.1.4.4

12 files changed, 132 insertions, 12 deletions

diff --git a/sci-biology/embassy-domainatrix/ChangeLog b/sci-biology/embassy-domainatrix/ChangeLog
index d1a48da1c9e8..716ef9fcc97c 100644
--- a/sci-biology/embassy-domainatrix/ChangeLog
+++ b/sci-biology/embassy-domainatrix/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-domainatrix
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.23 2007/07/18 01:20:34 ribosome Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.24 2008/08/27 19:52:35 ribosome Exp $
+
+*embassy-domainatrix-0.1.0-r3 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-domainatrix-0.1.0-r3.ebuild:
+  New upstream version/package for EMBASSY 6.0.1.
 
 *embassy-domainatrix-0.1.0-r2 (18 Jul 2007)
 
diff --git a/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r3.ebuild b/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r3.ebuild
new file mode 100644
index 000000000000..7b7e13b6daee
--- /dev/null
+++ b/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r3.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0-r3.ebuild,v 1.1 2008/08/27 19:52:35 ribosome Exp $
+
+EBOV="6.0.1"
+
+inherit embassy
+
+DESCRIPTION="Protein domain analysis add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-domalign/ChangeLog b/sci-biology/embassy-domalign/ChangeLog
index 212ddb6f5bca..ab123329a42d 100644
--- a/sci-biology/embassy-domalign/ChangeLog
+++ b/sci-biology/embassy-domalign/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-domalign
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/ChangeLog,v 1.14 2007/07/18 01:22:31 ribosome Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/ChangeLog,v 1.15 2008/08/27 19:56:31 ribosome Exp $
+
+*embassy-domalign-0.1.0-r3 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-domalign-0.1.0-r3.ebuild:
+  New upstream version/package for EMBASSY 6.0.1.
 
 *embassy-domalign-0.1.0-r2 (18 Jul 2007)
 
diff --git a/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r3.ebuild b/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r3.ebuild
new file mode 100644
index 000000000000..c702f1f1166d
--- /dev/null
+++ b/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r3.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/embassy-domalign-0.1.0-r3.ebuild,v 1.1 2008/08/27 19:56:31 ribosome Exp $
+
+EBOV="6.0.1"
+
+inherit embassy
+
+DESCRIPTION="Protein domain alignment add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-domsearch/ChangeLog b/sci-biology/embassy-domsearch/ChangeLog
index 777c0aa1d109..ad5a85949a84 100644
--- a/sci-biology/embassy-domsearch/ChangeLog
+++ b/sci-biology/embassy-domsearch/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-domsearch
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.13 2007/07/18 01:38:29 ribosome Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.14 2008/08/27 19:45:12 ribosome Exp $
+
+*embassy-domsearch-0.1.0-r3 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-domsearch-0.1.0-r3.ebuild:
+  New upstream version/package for EMBASSY 6.0.1.
 
 *embassy-domsearch-0.1.0-r2 (18 Jul 2007)
 
diff --git a/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r3.ebuild b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r3.ebuild
new file mode 100644
index 000000000000..9b67e6c794de
--- /dev/null
+++ b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r3.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r3.ebuild,v 1.1 2008/08/27 19:45:12 ribosome Exp $
+
+EBOV="6.0.1"
+
+inherit embassy
+
+DESCRIPTION="Protein domain search add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-esim4/ChangeLog b/sci-biology/embassy-esim4/ChangeLog
index 37d2e3ae9fd6..b93c9c8f52aa 100644
--- a/sci-biology/embassy-esim4/ChangeLog
+++ b/sci-biology/embassy-esim4/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-esim4
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.22 2007/07/18 01:35:55 ribosome Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.23 2008/08/27 19:50:53 ribosome Exp $
+
+*embassy-esim4-1.0.0-r5 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-esim4-1.0.0-r5.ebuild:
+  New upstream version/package for EMBASSY 6.0.1.
 
 *embassy-esim4-1.0.0-r4 (18 Jul 2007)
 
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild
new file mode 100644
index 000000000000..3632fd62336e
--- /dev/null
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r5.ebuild,v 1.1 2008/08/27 19:50:53 ribosome Exp $
+
+EBOV="6.0.1"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-memenew/ChangeLog b/sci-biology/embassy-memenew/ChangeLog
index 1d77028371d6..579a3f86bcf7 100644
--- a/sci-biology/embassy-memenew/ChangeLog
+++ b/sci-biology/embassy-memenew/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-memenew
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/ChangeLog,v 1.5 2007/02/15 22:54:09 je_fro Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/ChangeLog,v 1.6 2008/08/27 19:48:20 ribosome Exp $
+
+*embassy-memenew-0.1.0-r1 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-memenew-0.1.0-r1.ebuild:
+  New upstream version/package for EMBASSY 6.0.1.
 
   15 Feb 2007; Jeff Gardner <je_fro@gentoo.org>
   embassy-memenew-0.1.0.ebuild:
diff --git a/sci-biology/embassy-memenew/embassy-memenew-0.1.0-r1.ebuild b/sci-biology/embassy-memenew/embassy-memenew-0.1.0-r1.ebuild
new file mode 100644
index 000000000000..537e01fe7098
--- /dev/null
+++ b/sci-biology/embassy-memenew/embassy-memenew-0.1.0-r1.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/embassy-memenew-0.1.0-r1.ebuild,v 1.1 2008/08/27 19:48:20 ribosome Exp $
+
+EBOV="6.0.1"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+
+src_install() {
+	embassy_src_install
+	insinto /usr/include/emboss/meme
+	doins src/INCLUDE/*.h
+}
diff --git a/sci-biology/embassy-signature/ChangeLog b/sci-biology/embassy-signature/ChangeLog
index b07b8ed44b9b..e4021971b13d 100644
--- a/sci-biology/embassy-signature/ChangeLog
+++ b/sci-biology/embassy-signature/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-signature
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.13 2007/07/18 01:53:11 ribosome Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.14 2008/08/27 19:55:11 ribosome Exp $
+
+*embassy-signature-0.1.0-r3 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-signature-0.1.0-r3.ebuild:
+  New upstream version/package for EMBASSY 6.0.1.
 
 *embassy-signature-0.1.0-r2 (18 Jul 2007)
 
diff --git a/sci-biology/embassy-signature/embassy-signature-0.1.0-r3.ebuild b/sci-biology/embassy-signature/embassy-signature-0.1.0-r3.ebuild
new file mode 100644
index 000000000000..d847f5a472de
--- /dev/null
+++ b/sci-biology/embassy-signature/embassy-signature-0.1.0-r3.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/embassy-signature-0.1.0-r3.ebuild,v 1.1 2008/08/27 19:55:11 ribosome Exp $
+
+EBOV="6.0.1"
+
+inherit embassy
+
+DESCRIPTION="Protein signature add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"