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authorJustin Lecher <jlec@gentoo.org>2015-06-30 06:28:05 +0000
committerJustin Lecher <jlec@gentoo.org>2015-06-30 06:28:05 +0000
commit0575438dbdffa54104ce605d945691b0011276f6 (patch)
tree005ddd55dec23ade94543fc0e2c2076581d25bd1 /sci-biology
parentStable for PPC64 (bug #553616). (diff)
downloadhistorical-0575438dbdffa54104ce605d945691b0011276f6.tar.gz
historical-0575438dbdffa54104ce605d945691b0011276f6.tar.bz2
historical-0575438dbdffa54104ce605d945691b0011276f6.zip
Version Bump
Package-Manager: portage-2.2.20/cvs/Linux x86_64 Manifest-Sign-Key: 0xE9402A79B03529A2!
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/ChangeLog7
-rw-r--r--sci-biology/rebase/Manifest34
-rw-r--r--sci-biology/rebase/rebase-1507.ebuild46
3 files changed, 70 insertions, 17 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 5e6ccc7be900..f6e94ed754a9 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/rebase
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.164 2015/06/15 17:59:38 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.165 2015/06/30 06:28:04 jlec Exp $
+
+*rebase-1507 (30 Jun 2015)
+
+ 30 Jun 2015; Justin Lecher <jlec@gentoo.org> +rebase-1507.ebuild:
+ Version Bump
15 Jun 2015; Justin Lecher <jlec@gentoo.org> -rebase-1504.ebuild:
Drop old
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index e7c99dc0b9ef..61bdd545b708 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -3,26 +3,28 @@ Hash: SHA512
DIST rebase-1505.tar.xz 70790908 SHA256 dfeee8c7ee81dcd352e5a18319cc9c34c7cade73ef2843c8e7bec96fac29193f SHA512 9f83e7286908036478f021f1611bc04258458a769ce0cb62d1316726f5d644ed7038869e5e12a896123a33f433063d598c36771c80d90d7998d26a7aa19678d3 WHIRLPOOL 8e8ce8e5882d2a09b32cc5526c97724fec9894566587e79804425dbd68d4eb65644bc86eab3054190529b285c821e94bab0b60723d33bbe91332c5b165f2a9c6
DIST rebase-1506.tar.xz 68649464 SHA256 06726908e1bdea2dd31e0e1fce885192b1fe152009ab740cd2079d652bc2bc7c SHA512 5f3030f8212e2b63bdf4abd96e8004159e522d5a8d485eb5dc5b124f32abb1f5e9eebc91950975cd997110f2f9059c78c2851a6b3eb14e0465f72dd7a7a96dca WHIRLPOOL 1372a646a9a29b855535e188b954cc26041f692cc2d7b84cd906a5e95bc4b6bb94f96c2cd98494942685d18d9643fcb4b0bf9b292abbae9813358487fb3dd3c1
+DIST rebase-1507.tar.xz 68538212 SHA256 87880a3f8cd49f537abf0a3d3fe00dca928ab5299cfd436351a279051f358efe SHA512 9fcb61d0f53f227485ecdaa86709b3fb7c20d8a430c456d2c24f68154691028709358d8dc25d4be2662d368e3cdd13d15eb316342dfb0f1aa8447b3742b80375 WHIRLPOOL f8cfc127890e17529d557f69c20be7ad90cd9e01ff9e112d41bb8c88359f7310744977253e8f82c71301ef1ea449f2e4cee9189e3b552edc242ab1033dca0b5e
EBUILD rebase-1505.ebuild 1201 SHA256 4904ffb209f961e8a0a05c1033ce65edb97546a1aae8c2b0b77b769b284efcb1 SHA512 4b40e29ff682f9eb14fd7b97599a35c63a88c9193aa505051b3eb2299c9345dd44e5407d1818f047b8792d08b0be518b0594cbb34632fb449aecade5339b2f42 WHIRLPOOL 747228ca5d1c743305979d68c931ceed6d3da4b1da3c074f58a4144b1166aac08790903682ca43ea8acf535eea6eab43f5b6218e90da49a97c8e375168d69f07
EBUILD rebase-1506.ebuild 1205 SHA256 a53fcaead179aa6f5ad9fd1f5401a55c8ab03c69389c2cd46f0711758bcc0c55 SHA512 f2e5e217d02626d99c39d62f6eb2c9dcee907bcf568fa02d207306d60d22533e0e6a2ee13e021519d59e4b24cde1379f3e5f08d086e6d2bc8d4e7dc7ec89a407 WHIRLPOOL 26906d7bc0267b6298c2e3514d021c57a92dd6595360e429f3cc1c5bfc5285972ac3b4b806a71995bac17a4aacf2989b164ef9c21740dd86ba60f97775a907fe
-MISC ChangeLog 20500 SHA256 853ab426f15bd52fbb8255b9a90d6fba78acbc3c54857fa5dab51f0397d5fae9 SHA512 2d633eedcbeed9690ae82b2763035c6ae8207c7fd43f7494aac73d4b6aca12e004e5c8e7517a92c78a82c990c0408b3d144f5a471b0581dbd51400f7347193b3 WHIRLPOOL 991458c0162d36791e73e281c6c6bbfd50971fffbfdd8e90f981df08f55077838d331e086edaadd0438b24e3a50f766390a7aef9785cec3d43cad6bb4560dddf
+EBUILD rebase-1507.ebuild 1205 SHA256 1105a692391df88be1b192733c96838663d1561ce2d23c89339151de8b8fa8c7 SHA512 7448f151853f5b1d8e897f5c43090318a062b5e40ea39bd95d7a84c3c8cf3c39c03891c8e27b1ea7bb0adf80a4b8835a0cdb8eba6246c9d440479e0fa81e8d36 WHIRLPOOL cf567d615752a524ce0f8b8cb0ac36ba500df9cb65c1d0a3a1bc5cd8f6bf288855c47cb23b1c7805ad956438deb407974b74bc678903286855d982cf7d984138
+MISC ChangeLog 20612 SHA256 5665eafd242e54c1cdc6353b09936274a8e4951837ff21bcc87b2d6ce96403b9 SHA512 a203915db9a39790b8de473dccf3da99bf5f84be1c0f5292cd2b1be3c195ed0977ca728c32d7288815500df0d52dfb66cb9c31be1316e9f3d8af01e0f1b6b699 WHIRLPOOL dae481a02024f67ea4c8c8fe3a9fcd48d2ff9124cded6e36ac41f4dddcabf69c7cd84576565a1bc0f7a218b3d600e1507644ad1a28d3930f6614aaac0bf6f17b
MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
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-Version: GnuPG v2.0
+Version: GnuPG v2.1
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diff --git a/sci-biology/rebase/rebase-1507.ebuild b/sci-biology/rebase/rebase-1507.ebuild
new file mode 100644
index 000000000000..5058e88a41f3
--- /dev/null
+++ b/sci-biology/rebase/rebase-1507.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1507.ebuild,v 1.1 2015/06/30 06:28:04 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}