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| author |   Justin Lecher <jlec@gentoo.org> | 2013-03-13 16:33:38 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-03-13 16:33:38 +0000 |
| commit | f17b4d2ac465e85bb25f5bb2b2ae212de28159a8 (patch) | |
| tree | 9c1c9f06e1ae2901e2106d25727dc249e368f94b /sci-biology/tophat/tophat-2.0.8.ebuild | |
| parent | Add build dep on kernel headers (bug #461614). (diff) | |
| download | historical-f17b4d2ac465e85bb25f5bb2b2ae212de28159a8.tar.gz historical-f17b4d2ac465e85bb25f5bb2b2ae212de28159a8.tar.bz2 historical-f17b4d2ac465e85bb25f5bb2b2ae212de28159a8.zip | |
sci-biology/tophat: Version Bump; unbundle sci-biology/seqan
Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64
Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'sci-biology/tophat/tophat-2.0.8.ebuild')
| -rw-r--r-- | sci-biology/tophat/tophat-2.0.8.ebuild | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/tophat/tophat-2.0.8.ebuild b/sci-biology/tophat/tophat-2.0.8.ebuild new file mode 100644 index 000000000000..d811ebe05cf8 --- /dev/null +++ b/sci-biology/tophat/tophat-2.0.8.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/tophat-2.0.8.ebuild,v 1.1 2013/03/13 16:33:37 jlec Exp $ + +EAPI=5 + +AUTOTOOLS_AUTORECONF=yes + +inherit autotools-utils + +DESCRIPTION="A fast splice junction mapper for RNA-Seq reads" +HOMEPAGE="http://tophat.cbcb.umd.edu/" +SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="debug" + +DEPEND=" + dev-libs/boost + sci-biology/samtools + sci-biology/seqan" +RDEPEND="${DEPEND} + sci-biology/bowtie" + +PATCHES=( "${FILESDIR}"/${P}-flags.patch ) + +src_prepare() { + rm -rf src/SeqAn* || die + autotools-utils_src_prepare +} + +src_configure() { + local myeconfargs=( + --disable-optim + $(use_enable debug) + ) + autotools-utils_src_configure +} |