diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-02-17 10:28:43 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-02-17 10:28:43 +0000 |
| commit | 989cf33c2699809eb739e684a315221d69237d3b (patch) | |
| tree | b42aea6c89ef890205d87f7ced97fdc45e5c2557 /sci-biology/phrap | |
| parent | sci-biology/consed: Quote EPREFIX, thanks Martin Mokrejš for the patch (diff) | |
| download | historical-989cf33c2699809eb739e684a315221d69237d3b.tar.gz historical-989cf33c2699809eb739e684a315221d69237d3b.tar.bz2 historical-989cf33c2699809eb739e684a315221d69237d3b.zip | |
sci-biology/phrap: Add missing deps, thanks Martin Mokrejš for the patch
Package-Manager: portage-2.2.0_alpha163/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-biology/phrap')
| -rw-r--r-- | sci-biology/phrap/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/phrap/Manifest | 18 | ||||
| -rw-r--r-- | sci-biology/phrap/metadata.xml | 10 | ||||
| -rw-r--r-- | sci-biology/phrap/phrap-1.080812.ebuild | 11 |
4 files changed, 33 insertions, 14 deletions
diff --git a/sci-biology/phrap/ChangeLog b/sci-biology/phrap/ChangeLog index 611942cb2297..8d7209f3c9c9 100644 --- a/sci-biology/phrap/ChangeLog +++ b/sci-biology/phrap/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/phrap -# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/ChangeLog,v 1.1 2008/12/31 00:28:51 weaver Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/ChangeLog,v 1.2 2013/02/17 10:28:37 jlec Exp $ + + 17 Feb 2013; Justin Lecher <jlec@gentoo.org> phrap-1.080812.ebuild, + metadata.xml: + Add missing deps, thanks Martin Mokrejš for the patch *phrap-1.080812 (31 Dec 2008) diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest index 98cfd0e8e5d1..0fc1b792caab 100644 --- a/sci-biology/phrap/Manifest +++ b/sci-biology/phrap/Manifest @@ -1,4 +1,14 @@ -DIST phrap-1.080812-distrib.tar.gz 317350 RMD160 9ac2e6209b4b681fd8099c49be5fbd511a5da1a8 SHA1 0f63613324dbce931c9b38b84d8ede314730dc87 SHA256 7025f3cb30e5a3305a13d150f39a85580ade0bbf8169b25db65cbe396e201052 -EBUILD phrap-1.080812.ebuild 995 RMD160 133891d93e71ae71e9039e75c8817226b4252f68 SHA1 3cc84f6acf7632700418fd2b330c8f026c16b403 SHA256 91e76a78ee2fa94daf313a58b0ab8a2089e0c058a2c2737b92d245b2ed8759b5 -MISC ChangeLog 413 RMD160 b7e9bf3cc01af15f399acce3a2cf9bf211d2e9ff SHA1 07517cb6a51c7b8d670bbd0e255dd61ba3c0a189 SHA256 7c8553d5640e22e92d06483b6838b24c0f25b9c3d5acaa2968a039d10ed7e978 -MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA512 + +DIST phrap-1.080812-distrib.tar.gz 317350 SHA256 7025f3cb30e5a3305a13d150f39a85580ade0bbf8169b25db65cbe396e201052 +EBUILD phrap-1.080812.ebuild 1239 SHA256 b68f50ce708a5a04b81a7eab43a8b0eeb4dc974b038947b62b236ba72eec6a2f SHA512 498c9f5a59dbbaede8815b386140075377995abd20422866db6e6477140f6d1e6a8330f83049b2a89e6a14eb3fda3512c9cf7b80ebf6cc1566a02428e077dc10 WHIRLPOOL c245966f7e3d5b3149ca90f408ec7a8eee5efe5d9750b58296cbf45876c89dc81921b40a9860313b25bc4f7b1d77172c785d3e06096764df79218906a497145c +MISC ChangeLog 555 SHA256 31bd34a9cb6789960826af19254af0433ef1a26b69228e76aed3a1b4bae51068 SHA512 0d17413c7744929e9d5daf5f4259f1829612c459e0a5b124b7e62a17843d1484acb808bd6bc7d7e40b1b47914c98bb0f18ac84f81bd1a7d60e399187f2711662 WHIRLPOOL 398c0ac4cd7f0c230ba4f5fd599907d3e3dfc429841fca3ad2867d3e41c5c29857907ffd86d442b602a7e5a10124d0a91bd2c7357f25d00f3eaed8040ddc157e +MISC metadata.xml 266 SHA256 98c7d1da8a728a1f1d796a79d51f25e4164e24048ec1aacbbf0ae2ffb171ff35 SHA512 879cdcca092d4c82b8c63672c91e08e7b01e81419d2c7c7b766de96ba2a32dd1e21c18968ed7172eec8604f52c92b19a31773f428bce9461d9b8190384680194 WHIRLPOOL 0f46288ab7090ad3da5b31816792427e4ad1a950e39a503bb406ebe8789cffedd9c85b46bfbf040fffb8aad443f512c28716a0a6436d0c06309155277060cdcd +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.19 (GNU/Linux) + +iEYEAREKAAYFAlEgsP0ACgkQgAnW8HDreRbH7wCgwE7rCBl6uLSIrYNgM4iaw0XO +ox8An1P9FyNPEpAFoMDyMCniOCCvPvVU +=6v5t +-----END PGP SIGNATURE----- diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml index 3302123e5718..fc7c76942a10 100644 --- a/sci-biology/phrap/metadata.xml +++ b/sci-biology/phrap/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/phrap/phrap-1.080812.ebuild b/sci-biology/phrap/phrap-1.080812.ebuild index 56a9092d293c..666e423e2541 100644 --- a/sci-biology/phrap/phrap-1.080812.ebuild +++ b/sci-biology/phrap/phrap-1.080812.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2008 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/phrap-1.080812.ebuild,v 1.3 2008/12/31 01:09:25 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/phrap-1.080812.ebuild,v 1.4 2013/02/17 10:28:37 jlec Exp $ DESCRIPTION="Phrap, swat, cross_match: Shotgun assembly and alignment utilities" HOMEPAGE="http://www.phrap.org/" @@ -12,7 +12,8 @@ KEYWORDS="~amd64 ~x86" IUSE="" DEPEND="" -RDEPEND="" +RDEPEND="dev-lang/perl + dev-perl/perl-tk" S="${WORKDIR}" @@ -28,6 +29,10 @@ src_compile() { sed -i 's/CFLAGS=/#CFLAGS=/' makefile sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/env perl|' phrapview emake || die "emake failed" + # TODO: we need to extract staden sources because for compilation some of those + # files are needed: http://www.phrap.org/phredphrap/phrap.html + # (look for gcphrap and other gc* programs) + # emake gcphrap || die } src_install() { |