sci-biology/mira: Drop old

Package-Manager: portage-2.2.0_alpha116/cvs/Linux x86_64

4 files changed, 22 insertions, 113 deletions

diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index 465a5681b0aa..a02f37d83202 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/mira
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.17 2012/06/25 20:12:39 jdhore Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.18 2012/07/08 18:01:08 jlec Exp $
+
+  08 Jul 2012; Justin Lecher <jlec@gentoo.org> -mira-3.0.5.ebuild,
+  -mira-3.2.0.ebuild:
+  Drop old
 
   25 Jun 2012; Jeff Horelick <jdhore@gentoo.org> mira-3.2.1.ebuild:
   marked x86 per bug 418439
diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest
index 5c0532336f9d..fdd1c166cc36 100644
--- a/sci-biology/mira/Manifest
+++ b/sci-biology/mira/Manifest
@@ -1,10 +1,17 @@
-AUX mira-3.0.0-asneeded.patch 1468 RMD160 5ad66bd3a1861ef984af4fb2b527755fd8901440 SHA1 f17e537e98f77eeaaf7502894f8383dd96c588bc SHA256 17dec784921baccf2c515f7c269209b5cdeb23143b3412e8ad967e74682ee71f
-DIST mira-3.0.5.tar.bz2 7132355 RMD160 206f209dec8ac32f8192160a7642e3d27a42df25 SHA1 c4659ed69e8ffe328050b985a971b81d0bf73fd2 SHA256 82da77b203b17040939a39a53b6cdf874ba39a448d68770ebf70edfc53884839
-DIST mira-3.2.0.tar.bz2 12454646 RMD160 d079e4f1fe92e423c8c8c7530d3658ec37fd18eb SHA1 c77cb19d0af618b5d98d9a30ed83a93f23e7a743 SHA256 0cd2e9d5541046c020faecd5adbbc57a32ba15cc11a36aa5f49f51096c69d15c
-DIST mira-3.2.1.tar.bz2 9626154 RMD160 b998226fe4ea0efbe6023dac8b073af1782167b9 SHA1 432d1ecd2acb62a8584f29a10b55943165cd0586 SHA256 86a2c00d182573008ef41f7725aec72ea69756ea9f3dc7e798a7d253a47f8bd7
-DIST mira_3rdparty_17-04-2010.tar.bz2 31296 RMD160 888a38f865963b3109d3a331604e079010b55d81 SHA1 5f2fbe3e2e1bb5c5de44d414963e57b8dbcf760c SHA256 ec2c77508d75b7c28d3d26137ab69648b1ed653af93d486245ad0e4624e332b2
-EBUILD mira-3.0.5.ebuild 1511 RMD160 2202261d79da75665535dae8998892488bb53b62 SHA1 7e91ed3e978eb25b201a404ae027978d77c9811d SHA256 1d1d6859664999c3f6a713478184d2f941e685d6e8a057cb61618da4e0868e58
-EBUILD mira-3.2.0.ebuild 1534 RMD160 2dff936ab34e3c7e7331ca23788507d812708906 SHA1 afc00dd228c5e8b6aa6e2e8ffef5b88f8562a157 SHA256 4d87a9e3f1b57d5e1fe41dd3606fe25cbf85e271cd2f5b7deae858dc91fee60e
-EBUILD mira-3.2.1.ebuild 1686 RMD160 dd78768e00720f5f9688489536c85a9b2f1f870d SHA1 615f37f0a9eec5e70028c767ecea42bc247f2622 SHA256 0fc8857b18eaba4bbb08e00e699ef24c7e6bfea77fa33f21fc4a023dd490bcbe
-MISC ChangeLog 2426 RMD160 75e60dbfbff01db1e5e123e6b958eef7a1aa73f2 SHA1 047768fc32f733ac779c042c03d4dadcd0b9b75c SHA256 fc61bbca69848005b2a4b9ba1b9ae29ea9151c8d35031dcdcb72c6d29b198d93
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA256
+
+AUX mira-3.0.0-asneeded.patch 1468 SHA256 17dec784921baccf2c515f7c269209b5cdeb23143b3412e8ad967e74682ee71f SHA512 23f151eb138a216f329b9fefc8b014391915dd5d578b36ac87b4b7f52277313ae8081011b6839882dcb991524ad674ff22bfd7d6d2a91d28f9e5ff19d41e2f3d WHIRLPOOL b3d37aa5b5963cd75a9c9d4d513351c408aa315f40a07acfb8b8c1998f032ad3df50819786e8f31c7c411cd07b08f1609b4e9f78e4305a97eaf23255a3893ec5
+DIST mira-3.2.1.tar.bz2 9626154 SHA256 86a2c00d182573008ef41f7725aec72ea69756ea9f3dc7e798a7d253a47f8bd7
+DIST mira_3rdparty_17-04-2010.tar.bz2 31296 SHA256 ec2c77508d75b7c28d3d26137ab69648b1ed653af93d486245ad0e4624e332b2
+EBUILD mira-3.2.1.ebuild 1686 SHA256 0fc8857b18eaba4bbb08e00e699ef24c7e6bfea77fa33f21fc4a023dd490bcbe SHA512 9547e917b577e04c08012dbbe1012f12b74d6a07ee627cb23a76f3914d4f42d5b82dccd15f094f0ada5b2b786b42d134d4d414ed9e1bd57b50a9520536a4c500 WHIRLPOOL 4459ccbbb0759d09b9b066803382e364fe4145a401ef55d0e5dec3ebd6669003379f4c99dadb5c41fe2c13a6e9ed003cb57335975e986c2c8d152c25d923570f
+MISC ChangeLog 2525 SHA256 5bafe1821d1272b9688ddeff8f65e6ba3d8f427eb6c069855a8ed575cfec551b SHA512 1a21771761fa98717e86e511e0651d9ee3200881aca304276874b70399ec14ffed43c608e2c65bd492df1655b2a05153d9c0015b4b4f0ebf57d9071c8a288c5b WHIRLPOOL 9ab71f4ad6815add76e95cb4abf3c60dd069d0c0f6fef43af4bf0a6bb8949210622897a3a96ac47d2785d07820e0e8924c3642479220b22c6bc73ba1689ab87d
+MISC metadata.xml 259 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 SHA512 c3aea4d69d75075af0108a03b7e109cfed6a1fe324f8ccbda3d4e5ca8a5070f1b24ddeb46b64787e10fd22252d867abcee1f31316d602f7e32fe3c990ae60d74 WHIRLPOOL e50da2f26fd4c908446d22da3edb595d60e61d72def374be46440358802a211fc34045b7ad970c4f94b57f7b17ff24cfe64dc94254fea20e047f1fbbbcae0c64
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.19 (GNU/Linux)
+Comment: GPGTools - http://gpgtools.org
+
+iEYEAREIAAYFAk/5yukACgkQgAnW8HDreRb2OgCgyio89gC3q4VQRQ/aSV0nbiS9
+bs0AoJPXPykyItDoAmfbaXbdtohGBHzw
+=Nnfj
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/mira/mira-3.0.5.ebuild b/sci-biology/mira/mira-3.0.5.ebuild
deleted file mode 100644
index b1219203ea53..000000000000
--- a/sci-biology/mira/mira-3.0.5.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.5.ebuild,v 1.2 2010/06/28 21:32:20 jlec Exp $
-
-EAPI="3"
-
-MIRA_3RDPARTY_PV="17-04-2010"
-
-inherit autotools base multilib
-
-DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
-HOMEPAGE="http://www.chevreux.org/projects_mira.html"
-SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
-	mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="doc"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
-
-CDEPEND=">=dev-libs/boost-1.35.0"
-DEPEND="${CDEPEND}
-	dev-libs/expat
-	doc? ( >=app-text/texlive-core-2009 )"
-RDEPEND="${CDEPEND}"
-
-src_prepare() {
-	find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
-	epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch
-	AT_M4DIR="config/m4" eautoreconf
-}
-
-src_configure() {
-	econf \
-		--with-boost="${EPREFIX}"/usr/$(get_libdir) \
-		--with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
-		--with-boost-thread=boost_thread-mt
-}
-
-src_compile() {
-	base_src_compile
-	if use doc; then emake -C doc clean docs || die; fi
-}
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL
-	find doc/docs/man -type f | xargs doman
-	find doc/docs/texinfo -type f | xargs doinfo
-	dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl}
-}
diff --git a/sci-biology/mira/mira-3.2.0.ebuild b/sci-biology/mira/mira-3.2.0.ebuild
deleted file mode 100644
index df4426c9be6c..000000000000
--- a/sci-biology/mira/mira-3.2.0.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.2.0.ebuild,v 1.4 2011/02/11 13:03:49 hwoarang Exp $
-
-EAPI="3"
-
-MIRA_3RDPARTY_PV="17-04-2010"
-
-inherit autotools base multilib
-
-DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
-HOMEPAGE="http://www.chevreux.org/projects_mira.html"
-SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
-	mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos"
-
-CDEPEND=">=dev-libs/boost-1.41.0-r3"
-DEPEND="${CDEPEND}
-	dev-libs/expat"
-RDEPEND="${CDEPEND}"
-
-src_prepare() {
-	find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
-	epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch
-	AT_M4DIR="config/m4" eautoreconf
-}
-
-src_configure() {
-	econf \
-		--with-boost="${EPREFIX}"/usr/$(get_libdir) \
-		--with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \
-		--with-boost-thread=boost_thread-mt
-}
-
-src_compile() {
-	base_src_compile
-	# TODO: resolve docbook incompatibility for building docs
-	#if use doc; then emake -C doc clean docs || die; fi
-}
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL
-	find doc/docs/man -type f | xargs doman
-	find doc/docs/texinfo -type f | xargs doinfo
-	dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl}
-}