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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-10-09 04:01:53 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-10-09 04:01:53 +0000 |
| commit | 12a47981f68f8a167bee5b01e405066db03a203d (patch) | |
| tree | 69d1c544e2e0a32cbbfc9aee6d45996af7b58de0 /sci-biology/bedtools | |
| parent | Fix build failure on amd64. Thanks to Claudio Calvelli for the patch. Bug 385... (diff) | |
| download | historical-12a47981f68f8a167bee5b01e405066db03a203d.tar.gz historical-12a47981f68f8a167bee5b01e405066db03a203d.tar.bz2 historical-12a47981f68f8a167bee5b01e405066db03a203d.zip | |
Import from Science overlay and rewrite
Package-Manager: portage-2.2.0_alpha45/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/bedtools')
| -rw-r--r-- | sci-biology/bedtools/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/bedtools/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/bedtools/bedtools-2.13.3.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/bedtools/metadata.xml | 14 |
4 files changed, 73 insertions, 0 deletions
diff --git a/sci-biology/bedtools/ChangeLog b/sci-biology/bedtools/ChangeLog new file mode 100644 index 000000000000..dbf5b6263ac9 --- /dev/null +++ b/sci-biology/bedtools/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/bedtools +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/ChangeLog,v 1.1 2011/10/09 04:01:53 weaver Exp $ + +*bedtools-2.13.3 (09 Oct 2011) + + 09 Oct 2011; Andrey Kislyuk <weaver@gentoo.org> +bedtools-2.13.3.ebuild, + +metadata.xml: + Import from Science overlay and rewrite + + 24 Jun 2011; Justin Lecher <jlec@gentoo.org> bedtools-2.10.1.ebuild: + SOme ebuild cleaning + diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest new file mode 100644 index 000000000000..4d35840a8783 --- /dev/null +++ b/sci-biology/bedtools/Manifest @@ -0,0 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +DIST BEDTools.v2.13.3.tar.gz 928205 RMD160 2d4da4fc9f15ac9ba16e733349232822b87a09a9 SHA1 bcd52ba59908c1f98d0c84f4d3fb2e1efb0636d0 SHA256 9c3ec91dfe276005016e002badabf9fa2e12218ed5dbdb30679b5120ed330bbc +EBUILD bedtools-2.13.3.ebuild 820 RMD160 ee781c0550d4b881bfb4dbdd5154f434076a7379 SHA1 638f696da7369a8f2879edd3d71cb7ba3f0905fc SHA256 b4aa425340ee26d55915ae00b975b0462156a7d8b9446c29418ed1b84adfbc01 +MISC ChangeLog 475 RMD160 7222f0882455a6e09651619a40d60438170a8796 SHA1 7164e706ce82e0c9e7efc61b20e23464b6ba0541 SHA256 0d780fa3070ab58cf2c2244ad90298aa79b61efed7abefe1610e594ad0c49fc2 +MISC metadata.xml 471 RMD160 b3da36bc88c543e8e7589238dc39ea30a0cba58e SHA1 2b966e33142eb4491a33fb385cb70e230884398c SHA256 b845453d89e580a9ef80ba745d64cba010dbba50021aaf6f44bcbf5f28512fa0 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v1.4.11 (GNU/Linux) + +iEYEARECAAYFAk6RHLcACgkQ8xSwyhbn2Oa26gCeMC0dKoeW4Sk3FierqSntNkcl +7QwAni5cd6xyn2mJOFId6jCFKILifVJF +=ymwO +-----END PGP SIGNATURE----- diff --git a/sci-biology/bedtools/bedtools-2.13.3.ebuild b/sci-biology/bedtools/bedtools-2.13.3.ebuild new file mode 100644 index 000000000000..c635c3de7f27 --- /dev/null +++ b/sci-biology/bedtools/bedtools-2.13.3.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/bedtools-2.13.3.ebuild,v 1.1 2011/10/09 04:01:53 weaver Exp $ + +EAPI=4 + +inherit flag-o-matic + +DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats" +HOMEPAGE="http://code.google.com/p/bedtools/" +SRC_URI="http://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +S="${WORKDIR}/BEDTools-Version-${PV}" + +src_prepare() { + filter-ldflags -Wl,--as-needed + sed -i -e '1 a SHELL := /bin/bash -e' \ + -e '/export CXXFLAGS/ d' \ + -e '/export CXX/ d' \ + Makefile || die +} + +src_install(){ + dobin bin/* + dodoc README* RELEASE_HISTORY + newbin bin/overlap bt_ovelap +} diff --git a/sci-biology/bedtools/metadata.xml b/sci-biology/bedtools/metadata.xml new file mode 100644 index 000000000000..dffdf8b00408 --- /dev/null +++ b/sci-biology/bedtools/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <longdescription>BEDTools: a flexible suite of utilities for comparing genomic features.</longdescription> +</pkgmetadata> |