Version bump.

Package-Manager: portage-2.2.10/cvs/Linux x86_64

4 files changed, 338 insertions, 3 deletions

diff --git a/dev-libs/igraph/ChangeLog b/dev-libs/igraph/ChangeLog
index 20d4bcec108e..7b6d7c0390b2 100644
--- a/dev-libs/igraph/ChangeLog
+++ b/dev-libs/igraph/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for dev-libs/igraph
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-libs/igraph/ChangeLog,v 1.7 2013/03/09 17:18:48 vadimk Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-libs/igraph/ChangeLog,v 1.8 2014/04/18 20:58:32 mrueg Exp $
+
+*igraph-0.6.5 (18 Apr 2014)
+
+  18 Apr 2014; Manuel Rüger <mrueg@gentoo.org>
+  +files/igraph-0.6.5-unbundle.patch, +igraph-0.6.5.ebuild:
+  Version bump.
 
   09 Mar 2013; Vadim Kuznetsov vadimk@gentoo.org metadata.xml:
   maintainer needed
diff --git a/dev-libs/igraph/Manifest b/dev-libs/igraph/Manifest
index 6984b52efff4..d71dc8220f06 100644
--- a/dev-libs/igraph/Manifest
+++ b/dev-libs/igraph/Manifest
@@ -1,5 +1,8 @@
 AUX igraph-0.6.4-unbundle.patch 8816 SHA256 b7e154e6581c89626d1f2632e005114a82600d62e7399408d564147cc1992101 SHA512 787fdc8c934e36c2607b651f38bd49469393c9dad8519580b10fffcdfdb0a1565e0fff571fba819427972fc4e072fa06677e4d53b8e250bf9d49d8c7e87ad352 WHIRLPOOL 2e806d46ace140c18cc786e734814e43a61e3f9413e26bf11c3470aa6822f37c0c46038ee44bdc82a5bae7a28d5bc218ef3b8f6f0177be44768ed7eb711d2bce
+AUX igraph-0.6.5-unbundle.patch 8816 SHA256 674e72d8ffbad52133c66ac289f969d6ac12e13c8336ff39662f866a2aabda83 SHA512 d3ee44646362339120a51dea81e8ab128dcb118a40fa9c838750622279e6de4dabecacccb2e29893974040d5e9a6dc66ba2382b09acf69bbfb29593a04c10a36 WHIRLPOOL a9d8f5d7f7658d5cdb1c001c2c4b00072a5322c08f4cbd3078b0050fc862a514278335fd71bc09e259dd7246cd5cf4db9a3b75d0837bab418c8d7eadfca6d9b7
 DIST igraph-0.6.4.tar.gz 3021465 SHA256 1da6359240fe7c6fdc46cc0d6a5a083daba9baf130e0933b939977696e059e43 SHA512 1faeea0202381f5e2b2aafb180b6670121b3c24622f60729f2ff461bcfd06da61be28743327470c8700d67e9c08d01a6a1fd19ad27ec5e06e60069f27e04af10 WHIRLPOOL 3637ed0d2a67705f1409a451330035e8892cd1fa7136de67525c9a5b668549941f6f500a542257fcd0e2832c59b024e5272e1abeefcebb0045aeda469e2a31c9
+DIST igraph-0.6.5.tar.gz 3209599 SHA256 7d1f8da9ebb6dd7acc648d9c7d6f4c490e998c5ca54ddf85db0017de3cc73fa2 SHA512 820ef71236942be21c393aede5913fe0d699cc901925ce3d989f4cc543eeac748d97e6e7c82f96c505a1c8580371447b27adf8369047b9d8f3d009eb9be6880d WHIRLPOOL cc9b2b084771b063455d0aa5353a6838e0684cd6a93d8c957973e2534333832e2680d6b975c7471cfabce55d00f88b9d4c6e1b120009f1cd2e17609a1c7d6f2d
 EBUILD igraph-0.6.4.ebuild 1205 SHA256 36e72b7f3b7d5786257de1374362f83b5410162ce1c201cd1e00d3c27c4055de SHA512 466646de2824772ade982d095738fb6dfe3f53e81c89a9d895c35eb4d8c887ad5adbe868caa86c6db1a37b1c55f13b554e87a1be86a3e4555f7a7a7aecf4f0ff WHIRLPOOL e49fefb339a62747a3a0ab9e43b04ea32f3cce29c2743dc769bea0351a25d70a5d57f9c119ee7eb672aa1061c98f1d481b55b47a711a00b6c47f16a328aab54a
-MISC ChangeLog 1186 SHA256 b24d793080a7d405e22bd6e06fac11b7d8155553136029e9488c30966e2362d3 SHA512 83aaa94812de076e3815a9240b1b746aed0ccbf53586c8aa76a95b531e96b554e9c52d2b2c0047a01b9d3b9b94cd3902dcebc2185eb8165afff25501c1bb32a4 WHIRLPOOL d42a070b5584758b2c4888b6fea92ae1d94d8e279dfeb70c3d8987eea70116d38bf7f4ee0483508fc5172ea97c1f4a201b53340bea1a6f3d552d12e41b440798
+EBUILD igraph-0.6.5.ebuild 1214 SHA256 74132e9c46daa3d797effad99088fe417daaa0eb1baa229e5e08bf7da77ef75f SHA512 98e5cc119869a8c40dbfbfe2b26db0c34966d7e0b4d6b852a845d6542b740f666928e5de27fe7183a4854b6e3e0d305e7c19afcdd21729e5463806cbe2fe63fa WHIRLPOOL fd140db682ef7ba4184a9652207b5b6a851d44edcce1428faeeff5be3604132a2c5165fb0a753dca0188d4b9bd7d44badbb2774860c5a035ac7edd52d36386c7
+MISC ChangeLog 1339 SHA256 5f8e494a9d24f0a90d25935d7192fa3df58d07b71eb19248a94055e2b382c224 SHA512 7681f5b1e636055b2fa98ec51cfef3a5eca610fc693da8cbe24ad34f85898823c0fb377a2fe7586c2e8cd7f4d54a026ee1a1a6675814192ae86e5c3eb806ff1e WHIRLPOOL 9dc98549bcdb0579eeb007d02b9f86fcc916c5f22f80689e39ddc02b2c80d5bfc582f83c7d2b261be82ff979b97935d62c9406b5e1b268ce40ee035a4c16fb90
 MISC metadata.xml 576 SHA256 330623fa77d9a45304093eba8123696332a26856d746ece7c712863edd49e525 SHA512 b92a3c1703424594b3638ad68ec9882f5245dda60e8df0aba2c0ae48d7d4304b1a6fc689f81c2da9c4e8c4393fb24da679a567d63ee13533320e50aef9a70da1 WHIRLPOOL dbf49cb15c38f04854327f9614855dd519eb65130362718e006df7f5033349fa67e030a0806f8e18cda54aeff536bff27032e66bf28a8c508247a10a5d92926f
diff --git a/dev-libs/igraph/files/igraph-0.6.5-unbundle.patch b/dev-libs/igraph/files/igraph-0.6.5-unbundle.patch
new file mode 100644
index 000000000000..f8f6319105ca
--- /dev/null
+++ b/dev-libs/igraph/files/igraph-0.6.5-unbundle.patch
@@ -0,0 +1,274 @@
+ configure.ac                              | 32 ++++++++++++-------------------
+ examples/simple/igraph_arpack_rnsolve.out |  3 +++
+ examples/simple/igraph_layout_merge2.out  | 20 +++++++++----------
+ examples/simple/igraph_sparsemat2.c       |  2 +-
+ examples/simple/igraph_sparsemat3.c       |  2 +-
+ examples/simple/igraph_sparsemat4.c       |  2 +-
+ src/Makefile.am                           | 11 +++--------
+ src/sparsemat.c                           |  2 +-
+ tests/Makefile.am                         |  2 +-
+ tests/mt.at                               |  2 +-
+ tests/types.at                            |  2 +-
+ 11 files changed, 35 insertions(+), 45 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index c617aec..6d5d162 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -165,7 +165,8 @@ if test "x$enable_gmp" != "xno"; then
+     AC_CHECK_HEADER([gmp.h], [
+       AC_DEFINE([HAVE_GMP], [1], [Define to 1 if you have the GMP library])
+       gmp_support=yes
+-      LDFLAGS="${LDFLAGS} -lgmp"      
++      GMP_LIBS="-lgmp"
++      AC_SUBST(GMP_LIBS)     
+     ])
+   ])
+ fi
+@@ -223,23 +224,15 @@ else
+ fi
+ 
+ if test "$internal_blas" = "no"; then
+-  AC_CHECK_LIB([blas], [daxpy_], [],
+-     AC_CHECK_LIB([blas], [daxpy], [],
+-        AC_CHECK_LIB([blas], [DAXPY_], [],
+-           AC_CHECK_LIB([blas], [DAXPY], [],
+-	      [AC_MSG_RESULT(not found, trying to use -lblas anyway.)]))))
+-  LDFLAGS="${LDFLAGS} -lblas"
++  PKG_CHECK_MODULES([BLAS],[blas])
++  CPPFLAGS="${CPPFLAGS} ${BLAS_CFLAGS}"
+ else
+   AC_DEFINE([INTERNAL_BLAS], [1], [Define to 1 if you use the internal BLAS library])
+ fi
+ 
+ if test "$internal_lapack" = "no"; then
+-  AC_CHECK_LIB([lapack], [dlarnv_], [],
+-     AC_CHECK_LIB([lapack], [dlarnv], [],
+-        AC_CHECK_LIB([lapack], [DLARNV_], [],
+-           AC_CHECK_LIB([lapack], [DLARNV], [],
+-	      [AC_MSG_RESULT(not found, trying to use -llapack anyway.)]))))
+-  LDFLAGS="${LDFLAGS} -llapack"
++  PKG_CHECK_MODULES([LAPACK],[lapack])
++  CPPFLAGS="${CPPFLAGS} ${LAPACK_CFLAGS}"
+ else
+   AC_DEFINE([INTERNAL_LAPACK], [1], [Define to 1 if you use the internal LAPACK library])
+ fi
+@@ -248,16 +241,14 @@ if test "$internal_arpack" = "no"; then
+   if test "$tls_support" = "yes"; then
+     AC_MSG_ERROR([Thread-local storage only supported with internal ARPACK library])
+   fi
+-  AC_CHECK_LIB([arpack], [dsaupd_], [],
+-     AC_CHECK_LIB([arpack], [dsaupd], [],
+-        AC_CHECK_LIB([arpack], [DSAUPD_], [],
+-           AC_CHECK_LIB([arpack], [DSAUPD], [],
+-	      [AC_MSG_RESULT(not found, trying to use -larpack anyway.)]))))
+-  LDFLAGS="${LDFLAGS} -larpack"
++  PKG_CHECK_MODULES([ARPACK],[arpack])
++  CPPFLAGS="${CPPFLAGS} ${ARPACK_CFLAGS}"
+ else
+   AC_DEFINE([INTERNAL_ARPACK], [1], [Define to 1 if you use the internal ARPACK library])
+ fi
+ 
++PKG_CHECK_MODULES([CS],[cxsparse])
++
+ glpk_support=no
+ if test "$internal_glpk" = "no"; then
+   AC_CHECK_LIB([glpk], [glp_read_mps], [
+@@ -270,7 +261,8 @@ if test "$internal_glpk" = "no"; then
+       ], [
+         AC_DEFINE([HAVE_GLPK], [1], [Define to 1 if you have the GLPK library])
+         glpk_support=yes
+-        LDFLAGS="${LDFLAGS} -lglpk"
++        GLPK_LIBS="-lglpk"
++        AC_SUBST(GLPK_LIBS)
+       ])
+     ])
+   ])
+diff --git a/examples/simple/igraph_arpack_rnsolve.out b/examples/simple/igraph_arpack_rnsolve.out
+index ec38497..47b1a6b 100644
+--- a/examples/simple/igraph_arpack_rnsolve.out
++++ b/examples/simple/igraph_arpack_rnsolve.out
+@@ -17,6 +17,7 @@
+ 22.0483 0
+ -21.3281 0
+ -3.00735 -19.2957
++-3.00735 19.2957
+ ---
+ 0.373224 0.226696 0.204213 0.0473383
+ -0.289145 -0.296079 -0.0479785 0.156365
+@@ -32,6 +33,7 @@
+ -21.3281 0
+ -12.4527 0
+ -3.00735 -19.2957
++-3.00735 19.2957
+ ---
+ -0.226696 0.695866 -0.204213 -0.0473383
+ 0.296079 0.120213 0.0479785 -0.156365
+@@ -47,6 +49,7 @@
+ -3.00735 19.2957
+ -3.00735 -19.2957
+ 12.1099 6.27293
++12.1099 -6.27293
+ ---
+ 0.0768616 -0.195028 -0.152389 0.21912
+ 0.147607 0.0704569 0.346547 0.125122
+diff --git a/examples/simple/igraph_layout_merge2.out b/examples/simple/igraph_layout_merge2.out
+index dfe2c22..9fe81bf 100644
+--- a/examples/simple/igraph_layout_merge2.out
++++ b/examples/simple/igraph_layout_merge2.out
+@@ -1,13 +1,13 @@
+--2.73912 -2.95429
+--0.479512 -4.00008
+-1.96326 -3.51798
+-3.65613 -1.69214
+-3.95248 0.780051
+-2.73912 2.95429
+-0.479512 4.00008
+--1.96326 3.51798
+--3.65613 1.69214
+--3.95248 -0.780051
++-2.55311 -3.13964
++-0.22007 -4.0407
++2.19703 -3.39835
++3.77493 -1.45795
++3.91094 1.03935
++2.55311 3.13964
++0.22007 4.0407
++-2.19703 3.39835
++-3.77493 1.45795
++-3.91094 -1.03935
+ -1.6061 6.30088
+ -4.92661 5.80435
+ -3.69637 8.92826
+diff --git a/examples/simple/igraph_sparsemat2.c b/examples/simple/igraph_sparsemat2.c
+index 296e52e..3abd0e3 100644
+--- a/examples/simple/igraph_sparsemat2.c
++++ b/examples/simple/igraph_sparsemat2.c
+@@ -21,7 +21,7 @@
+ 
+ */
+ 
+-#include <cs/cs.h>
++#include <cs.h>
+ #include <igraph.h>
+ #include <igraph_sparsemat.h>
+ #include <igraph_blas_internal.h>
+diff --git a/examples/simple/igraph_sparsemat3.c b/examples/simple/igraph_sparsemat3.c
+index 630bf1a..b23cbe1 100644
+--- a/examples/simple/igraph_sparsemat3.c
++++ b/examples/simple/igraph_sparsemat3.c
+@@ -21,7 +21,7 @@
+ 
+ */
+ 
+-#include <cs/cs.h>
++#include <cs.h>
+ #include <igraph.h>
+ #include <igraph_sparsemat.h>
+ 
+diff --git a/examples/simple/igraph_sparsemat4.c b/examples/simple/igraph_sparsemat4.c
+index 4d85bde..7497faf 100644
+--- a/examples/simple/igraph_sparsemat4.c
++++ b/examples/simple/igraph_sparsemat4.c
+@@ -21,7 +21,7 @@
+ 
+ */
+ 
+-#include <cs/cs.h>
++#include <cs.h>
+ #include <igraph.h>
+ #include <igraph_sparsemat.h>
+ 
+diff --git a/src/Makefile.am b/src/Makefile.am
+index af7cae7..5db09eb 100644
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -9,9 +9,6 @@ AM_YFLAGS = -d
+ 
+ lib_LTLIBRARIES         = libigraph.la
+ 
+-include lapack/blas.inc
+-include lapack/lapack.inc
+-include lapack/arpack.inc
+ include plfit/plfit.inc
+ 
+ F2C =	f2c/abort_.c	  f2c/dolio.c	    f2c/r_sin.c\
+@@ -99,8 +96,6 @@ if INTERNAL_ARPACK
+   ARPACK_LIB = libarpack.la
+ endif
+ 
+-include ../optional/glpk/glpk.inc
+-
+ if INTERNAL_GLPK
+   libglpk_la_SOURCES = 	$(GLPK)
+   libglpk_la_CFLAGS = -I$(top_srcdir)/optional/glpk
+@@ -247,7 +242,7 @@ libigraph_la_SOURCES       = $(HEADERS_PRIVATE) \
+ 			     drl_layout_3d.cpp drl_graph_3d.cpp \
+ 			     DensityGrid_3d.cpp \
+ 			     foreign-dl-parser.y foreign-dl-lexer.l \
+-			     $(CS) sparsemat.c mixing.c bigint.c bignum.c \
++			     sparsemat.c mixing.c bigint.c bignum.c \
+ 			     version.c optimal_modularity.c \
+ 			     igraph_fixed_vectorlist.c separators.c \
+ 			     igraph_marked_queue.c igraph_estack.c st-cuts.c \
+@@ -263,8 +258,8 @@ libigraph_la_SOURCES       = $(HEADERS_PRIVATE) \
+ libigraph_la_CFLAGS        = -I$(top_srcdir)/include -I$(top_builddir)/include $(WARNING_CFLAGS)
+ libigraph_la_CXXFLAGS	   = -I$(top_srcdir)/include -I$(top_builddir)/include $(WARNING_CFLAGS)
+ libigraph_la_LDFLAGS       = -no-undefined
+-libigraph_la_LIBADD        = -lm $(XML2_LIBS) $(F2C_LIB) $(BLAS_LIB) \
+-				 $(LAPACK_LIB) $(ARPACK_LIB) $(GLPK_LIB) $(PLFIT_LIB)
++libigraph_la_LIBADD        = -lm $(XML2_LIBS) $(F2C_LIB) $(BLAS_LIBS) $(GMP_LIBS) \
++				 $(LAPACK_LIBS) $(ARPACK_LIBS) $(GLPK_LIBS) $(PLFIT_LIB) $(CS_LIBS)
+ 
+ if INTERNAL_GLPK
+   libigraph_la_CFLAGS   += -I$(top_srcdir)/optional/glpk
+diff --git a/src/sparsemat.c b/src/sparsemat.c
+index 2cbdab1..b78b88d 100644
+--- a/src/sparsemat.c
++++ b/src/sparsemat.c
+@@ -23,7 +23,7 @@
+ 
+ #include "config.h"
+ 
+-#include "cs/cs.h"
++#include <cs.h>
+ 
+ #include "igraph_sparsemat.h"
+ #include "igraph_error.h"
+diff --git a/tests/Makefile.am b/tests/Makefile.am
+index 6d0ba59..af9bca9 100644
+--- a/tests/Makefile.am
++++ b/tests/Makefile.am
+@@ -13,7 +13,7 @@ $(srcdir)/package.m4: $(top_srcdir)/configure.ac
+ 	  echo 'm4_define([AT_PACKAGE_BUGREPORT], [@PACKAGE_BUGREPORT@])'; \
+ 	} >$(srcdir)/package.m4
+ 
+-EXTRA_DIST += package.m4
++#EXTRA_DIST += package.m4
+ 
+ TESTSUITE_AT = \
+ 	testsuite.at \
+diff --git a/tests/mt.at b/tests/mt.at
+index 050974a..e1496ac 100644
+--- a/tests/mt.at
++++ b/tests/mt.at
+@@ -29,5 +29,5 @@ AT_CLEANUP
+ AT_SETUP([Thread-safe ARPACK:])
+ AT_KEYWORDS([thread-safe ARPACK])
+ AT_COMPILE_CHECK([simple/tls2.c], [simple/tls2.out], [], [internal], 
+-                 [-lpthread])
++                 [-lpthread $(${PKG_CONFIG} --libs arpack)])
+ AT_CLEANUP
+diff --git a/tests/types.at b/tests/types.at
+index f80a6a2..45087e8 100644
+--- a/tests/types.at
++++ b/tests/types.at
+@@ -133,7 +133,7 @@ AT_CLEANUP
+ AT_SETUP([Sparse matrix, multiplications (igraph_sparsemat_t): ])
+ AT_KEYWORDS([sparse matrix igraph_sparsemat_t])
+ AT_COMPILE_CHECK([simple/igraph_sparsemat2.c], [simple/igraph_sparsemat2.out],
+-                 [], [INTERNAL], [-lblas])
++                 [], [INTERNAL], [$(${PKG_CONFIG} --libs blas)])
+ AT_CLEANUP
+ 
+ AT_SETUP([Sparse matrix, indexing (igraph_sparsemat_t): ])
diff --git a/dev-libs/igraph/igraph-0.6.5.ebuild b/dev-libs/igraph/igraph-0.6.5.ebuild
new file mode 100644
index 000000000000..73c3c76cf3d0
--- /dev/null
+++ b/dev-libs/igraph/igraph-0.6.5.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/dev-libs/igraph/igraph-0.6.5.ebuild,v 1.1 2014/04/18 20:58:32 mrueg Exp $
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils toolchain-funcs
+
+DESCRIPTION="Creating and manipulating undirected and directed graphs"
+HOMEPAGE="http://igraph.sourceforge.net/index.html"
+SRC_URI="mirror://sourceforge/project/${PN}/C%20library/${PV}/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="debug gmp static-libs"
+
+RDEPEND="
+	dev-libs/libxml2
+	>=sci-libs/arpack-3
+	virtual/blas
+	virtual/lapack
+	>=sci-libs/cxsparse-3
+	sci-mathematics/glpk
+	gmp? ( dev-libs/gmp )"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+PATCHES=( "${FILESDIR}"/${P}-unbundle.patch )
+
+src_prepare() {
+#	rm -rf src/{cs,f2c,lapack,f2c.h} optional/glpk || die
+#	rm -rf src/cs optional/glpk || die
+	autotools-utils_src_prepare
+}
+
+src_configure() {
+	tc-export PKG_CONFIG
+	local myeconfargs=(
+		$(use_enable gmp)
+		$(use_enable debug)
+		--disable-tls
+		--with-external-arpack
+		--with-external-blas
+		--with-external-lapack
+		--with-external-f2c
+		--with-external-glpk
+	)
+	autotools-utils_src_configure
+}