Cleanup, removing S=... with no effect

9 files changed, 9 insertions, 249 deletions

diff --git a/app-sci/ncbi-tools/ChangeLog b/app-sci/ncbi-tools/ChangeLog
index 97cb81da6908..66ff2029a342 100644
--- a/app-sci/ncbi-tools/ChangeLog
+++ b/app-sci/ncbi-tools/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for app-sci/ncbi-tools
 # Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ChangeLog,v 1.10 2004/03/30 20:00:14 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ChangeLog,v 1.11 2004/04/19 11:43:45 phosphan Exp $
+
+  19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org>
+  ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
+  ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild,
+  ncbi-tools-20040202.ebuild:
+  Cleanup, removing S=... with no effect
 
   30 Mar 2004; Donnie Berkholz <spyderous@gentoo.org>;
   ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild,
diff --git a/app-sci/ncbi-tools/files/digest-ncbi-tools-04222003-r2 b/app-sci/ncbi-tools/files/digest-ncbi-tools-04222003-r2
deleted file mode 100644
index 906826ee86d2..000000000000
--- a/app-sci/ncbi-tools/files/digest-ncbi-tools-04222003-r2
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 96208e10f92b2163f5dcc3c5cf74dd44 ncbi.tar.gz 10164179
-MD5 8db14fb4c337372c40140b5cff06b9b6 data.tar.gz 988677
diff --git a/app-sci/ncbi-tools/files/digest-ncbi-tools-20030422 b/app-sci/ncbi-tools/files/digest-ncbi-tools-20030422
deleted file mode 100644
index a397052e07a0..000000000000
--- a/app-sci/ncbi-tools/files/digest-ncbi-tools-20030422
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 96208e10f92b2163f5dcc3c5cf74dd44 ncbi-tools-20030422.tar.gz 10164179
-MD5 8db14fb4c337372c40140b5cff06b9b6 ncbi-tools-data-20030422.tar.gz 988677
diff --git a/app-sci/ncbi-tools/files/digest-ncbi-tools-20040202 b/app-sci/ncbi-tools/files/digest-ncbi-tools-20040202
deleted file mode 100644
index 8cf1e694978a..000000000000
--- a/app-sci/ncbi-tools/files/digest-ncbi-tools-20040202
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 365b6e54ea3a4341206c3784348ed39e ncbi-tools-20040202.tar.gz 12987183
-MD5 3403661f9d133187a3040a16b2ab1ed8 ncbi-tools-data.tar.gz 987691
diff --git a/app-sci/ncbi-tools/ncbi-tools-04222003-r2.ebuild b/app-sci/ncbi-tools/ncbi-tools-04222003-r2.ebuild
deleted file mode 100644
index b25093753a12..000000000000
--- a/app-sci/ncbi-tools/ncbi-tools-04222003-r2.ebuild
+++ /dev/null
@@ -1,75 +0,0 @@
-# Copyright 1999-2004 Gentoo Technologies, Inc.
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ncbi-tools-04222003-r2.ebuild,v 1.4 2004/03/30 20:00:14 spyderous Exp $
-
-DESCRIPTION="NCBI toolkit including the BLAST group of programs, entrez, ddv, udv, sequin and others"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
-
-SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/CURRENT/ncbi.tar.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/CURRENT/data.tar.gz"
-
-LICENSE="freedist"
-SLOT="0"
-
-KEYWORDS="x86 ~ppc ~sparc ~alpha"
-IUSE="X"
-
-DEPEND="app-shells/tcsh
-	X? ( virtual/x11 x11-libs/openmotif media-libs/libpng )"
-
-S=${WORKDIR}/${P}
-
-src_compile() {
-
-	cd ${WORKDIR}
-	# NCBI provides their own compile script where they check for
-	# the existence of X (openmotif and opengl) libs and compile in support
-	# if they exist
-
-	# future ebuilds will allow for -X which will not compile any of the
-	# graphical tools.  But for right now you get everything if you have
-	# X installed
-
-	# put in our cflags
-	sed -e "s/-O2/${CFLAGS}/" -i ncbi/platform/linux.ncbi.mk
-
-	./ncbi/make/makedis.csh 2>&1 | tee out.makedis.txt
-
-}
-
-src_install() {
-
-	cd ${WORKDIR}/ncbi/bin
-	dobin Nentrez blastclust entrcmd getmesh megablast testobj Psequin blastpgp entrez2 getpub ncbisort testval asn2ff cdscan errhdr getseq netentcf udv asn2gb checksub fa2htgs gil2bin rpsblast vecscreen asn2xml copymat fastacmd idfetch seedtop asndhuff ddv findspl impala seqtest asntool demo_regexp fmerge indexpub tbl2asn blastall demo_regexp_grep formatdb makemat test_regexp blastcl3 dosimple getfeat makeset testcore
-
-
-	cd ${WORKDIR}
-	dodir /usr/var/ncbi
-	insinto /usr/var/ncbi
-	doins data/*
-
-	dodoc README README.htm VERSION checkout.date
-
-	cd ${WORKDIR}/ncbi/doc
-	dodoc * images/* fa2htgs/*
-
-	# ncbirc file
-	dodir /etc/skel
-	insinto /etc/skel
-	newins ${FILESDIR}/dot-ncbirc .ncbirc
-
-	# env file
-	dodir /etc/env.d
-	insinto /etc/env.d
-	doins ${FILESDIR}/21ncbi
-}
-
-pkg_postinst() {
-	einfo " "
-	einfo "You'll need to edit /etc/env.d/21ncbi and indicate where your"
-	einfo "formatdb formatted databases are going to live on the filesystem."
-	einfo "Additionally, you may want to copy /etc/skel/.ncbirc to your"
-	einfo "current users home directories."
-	einfo " "
-	einfo "Be sure to see the /usr/share/doc/${PF} doc directory!"
-	einfo " "
-}
diff --git a/app-sci/ncbi-tools/ncbi-tools-20030422.ebuild b/app-sci/ncbi-tools/ncbi-tools-20030422.ebuild
deleted file mode 100644
index 3fec4bc31012..000000000000
--- a/app-sci/ncbi-tools/ncbi-tools-20030422.ebuild
+++ /dev/null
@@ -1,79 +0,0 @@
-# Copyright 1999-2004 Gentoo Technologies, Inc.
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ncbi-tools-20030422.ebuild,v 1.5 2004/03/30 20:00:14 spyderous Exp $
-
-DESCRIPTION="NCBI toolkit including the BLAST group of programs, entrez, ddv, udv, sequin and others"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
-
-SRC_URI="mirror://gentoo/ncbi-tools-20030422.tar.gz mirror://gentoo/ncbi-tools-data-20030422.tar.gz"
-
-LICENSE="freedist"
-SLOT="0"
-
-KEYWORDS="x86 ~ppc ~sparc ~alpha"
-IUSE="X png"
-
-DEPEND="app-shells/tcsh
-		X? (
-			virtual/x11
-			x11-libs/openmotif
-			png? ( media-libs/libpng )
-		)"
-
-S=${WORKDIR}/${P}
-
-src_compile() {
-
-	cd ${WORKDIR}
-	# NCBI provides their own compile script where they check for
-	# the existence of X (openmotif and opengl) libs and compile in support
-	# if they exist
-
-	# future ebuilds will allow for -X which will not compile any of the
-	# graphical tools.  But for right now you get everything if you have
-	# X installed
-
-	# put in our cflags
-	sed -e "s/-O2/${CFLAGS}/" -i ncbi/platform/linux.ncbi.mk
-
-	./ncbi/make/makedis.csh 2>&1 | tee out.makedis.txt
-
-}
-
-src_install() {
-
-	cd ${WORKDIR}/ncbi/bin
-	dobin Nentrez blastclust entrcmd getmesh megablast testobj Psequin blastpgp entrez2 getpub ncbisort testval asn2ff cdscan errhdr getseq netentcf udv asn2gb checksub fa2htgs gil2bin rpsblast vecscreen asn2xml copymat fastacmd idfetch seedtop asndhuff ddv findspl impala seqtest asntool demo_regexp fmerge indexpub tbl2asn blastall demo_regexp_grep formatdb makemat test_regexp blastcl3 dosimple getfeat makeset testcore bl2seq
-
-
-	cd ${WORKDIR}
-	dodir /usr/var/ncbi
-	insinto /usr/var/ncbi
-	doins data/*
-
-	dodoc README README.htm VERSION checkout.date
-
-	cd ${WORKDIR}/ncbi/doc
-	dodoc * images/* fa2htgs/*
-
-	# ncbirc file
-	dodir /etc/skel
-	insinto /etc/skel
-	newins ${FILESDIR}/dot-ncbirc .ncbirc
-
-	# env file
-	dodir /etc/env.d
-	insinto /etc/env.d
-	doins ${FILESDIR}/21ncbi
-}
-
-pkg_postinst() {
-	einfo " "
-	einfo "You'll need to edit /etc/env.d/21ncbi and indicate where your"
-	einfo "formatdb formatted databases are going to live on the filesystem."
-	einfo "Additionally, you may want to copy /etc/skel/.ncbirc to your"
-	einfo "current users home directories."
-	einfo " "
-	einfo "Be sure to see the /usr/share/doc/${PF} doc directory!"
-	einfo " "
-}
diff --git a/app-sci/ncbi-tools/ncbi-tools-20031103.ebuild b/app-sci/ncbi-tools/ncbi-tools-20031103.ebuild
index c609f895e46e..cf2d14eff7f2 100644
--- a/app-sci/ncbi-tools/ncbi-tools-20031103.ebuild
+++ b/app-sci/ncbi-tools/ncbi-tools-20031103.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2004 Gentoo Technologies, Inc.
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ncbi-tools-20031103.ebuild,v 1.5 2004/03/30 20:00:14 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ncbi-tools-20031103.ebuild,v 1.6 2004/04/19 11:43:45 phosphan Exp $
 
 DESCRIPTION="NCBI toolkit including the BLAST group of programs, entrez, ddv, udv, sequin and others"
 HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
@@ -19,8 +19,6 @@ DEPEND="app-shells/tcsh
 			png? ( media-libs/libpng )
 		)"
 
-S=${WORKDIR}/${P}
-
 src_compile() {
 
 	cd ${WORKDIR}
diff --git a/app-sci/ncbi-tools/ncbi-tools-20040202-r1.ebuild b/app-sci/ncbi-tools/ncbi-tools-20040202-r1.ebuild
index f47e6112a87c..281fee624686 100644
--- a/app-sci/ncbi-tools/ncbi-tools-20040202-r1.ebuild
+++ b/app-sci/ncbi-tools/ncbi-tools-20040202-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2004 Gentoo Technologies, Inc.
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ncbi-tools-20040202-r1.ebuild,v 1.3 2004/03/30 20:00:14 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ncbi-tools-20040202-r1.ebuild,v 1.4 2004/04/19 11:43:45 phosphan Exp $
 
 DESCRIPTION="NCBI toolkit including the BLAST group of programs, entrez, ddv, udv, sequin and others"
 HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
@@ -19,8 +19,6 @@ DEPEND="app-shells/tcsh
 		 	png? ( media-libs/libpng )
 		)"
 
-S=${WORKDIR}/${P}
-
 src_compile() {
 
 	cd ${WORKDIR}
diff --git a/app-sci/ncbi-tools/ncbi-tools-20040202.ebuild b/app-sci/ncbi-tools/ncbi-tools-20040202.ebuild
deleted file mode 100644
index 227a7095ae04..000000000000
--- a/app-sci/ncbi-tools/ncbi-tools-20040202.ebuild
+++ /dev/null
@@ -1,82 +0,0 @@
-# Copyright 1999-2004 Gentoo Technologies, Inc.
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/ncbi-tools/ncbi-tools-20040202.ebuild,v 1.3 2004/03/30 20:00:14 spyderous Exp $
-
-DESCRIPTION="NCBI toolkit including the BLAST group of programs, entrez, ddv, udv, sequin and others"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
-
-SRC_URI="mirror://gentoo/${P}.tar.gz mirror://gentoo/${PN}-data.tar.gz"
-
-LICENSE="freedist"
-SLOT="0"
-
-KEYWORDS="~x86 ~ppc ~sparc ~alpha"
-IUSE="X png"
-
-DEPEND="app-shells/tcsh
-		X? ( virtual/x11
-			x11-libs/openmotif
-		 	png? ( media-libs/libpng )
-		)"
-
-S=${WORKDIR}/${P}
-
-src_compile() {
-
-	cd ${WORKDIR}
-
-	if [ -z "`use X`" ]
-	then
-		ewarn "No X11 apps will be compiled"
-		sed -e "s:\#set HAVE_OGL=0:set HAVE_OGL=0:" -i ncbi/make/makedis.csh
-		sed -e "s:\#set HAVE_MOTIF=0:set HAVE_MOTIF=0:" -i ncbi/make/makedis.csh
-	fi
-
-	#X11 apps crap out with -O3	
-	sed -e "s:-O3:-O2:g" -i ncbi/platform/linux-x86.ncbi.mk
-	# change to our CFLAGS, use at your own risk
-	# sed -e "s:-pipe:${CFLAGS}:" -i ncbi/platform/linux-x86.ncbi.mk
-	# sed -e "s:-pipe:${CFLAGS}:" -i ncbi/platform/linux.ncbi.mk
-
-	# put in our MAKEOPTS (doesn't work)
-	# sed -e "s:make \$MFLG:make ${MAKEOPTS}:" -i ncbi/make/makedis.csh
-
-	./ncbi/make/makedis.csh 2>&1 | tee out.makedis.txt
-
-}
-
-src_install() {
-
-	cd ${WORKDIR}/ncbi/bin
-	dobin Nentrez blastclust entrcmd getmesh megablast testobj Psequin blastpgp entrez2 getpub ncbisort testval asn2ff cdscan errhdr getseq netentcf udv asn2gb checksub fa2htgs gil2bin rpsblast vecscreen asn2xml copymat fastacmd idfetch seedtop asndhuff ddv findspl impala seqtest asntool demo_regexp fmerge indexpub tbl2asn blastall demo_regexp_grep formatdb makemat test_regexp blastcl3 dosimple getfeat makeset testcore bl2seq
-
-
-	cd ${WORKDIR}
-	dodir /usr/var/ncbi
-	insinto /usr/var/ncbi
-	doins data/*
-
-	cd ${WORKDIR}/ncbi/doc
-	dodoc * images/* fa2htgs/*
-
-	# ncbirc file
-	dodir /etc/skel
-	insinto /etc/skel
-	newins ${FILESDIR}/dot-ncbirc .ncbirc
-
-	# env file
-	dodir /etc/env.d
-	insinto /etc/env.d
-	doins ${FILESDIR}/21ncbi
-}
-
-pkg_postinst() {
-	einfo " "
-	einfo "You'll need to edit /etc/env.d/21ncbi and indicate where your"
-	einfo "formatdb formatted databases are going to live on the filesystem."
-	einfo "Additionally, you may want to copy /etc/skel/.ncbirc to your"
-	einfo "current users home directories."
-	einfo " "
-	einfo "Be sure to see the /usr/share/doc/${PF} doc directory!"
-	einfo " "
-}