[sci-chemistry/gromacs] drop old version

Package-Manager: Portage-2.3.64, Repoman-2.3.12
Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

3 files changed, 0 insertions, 839 deletions

diff --git a/sci-chemistry/gromacs/ChangeLog b/sci-chemistry/gromacs/ChangeLog
deleted file mode 100644
index da2baae..0000000
--- a/sci-chemistry/gromacs/ChangeLog
+++ /dev/null
@@ -1,532 +0,0 @@
-# ChangeLog for sci-chemistry/gromacs
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  21 Dec 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.9999.ebuild:
-  sync with gx86
-
-  25 Nov 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-5.0.9999.ebuild, gromacs-9999.ebuild:
-  fixed a typo preventing AVX2 support (bug #530454)
-
-  09 Oct 2014; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  Fix doc install
-
-  07 Sep 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.9999.ebuild:
-  fix completion install
-
-  06 Sep 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.9999.ebuild:
-  sync with gx86
-
-  04 Sep 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.9999.ebuild:
-  sync with gx86
-
-  03 Sep 2014; Christoph Junghans <ottxor@gentoo.org> -Manifest,
-  -gromacs-5.0_rc1.ebuild:
-  drop old
-
-  03 Sep 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.9999.ebuild:
-  live update
-
-  07 Jul 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-5.0.9999.ebuild:
-  sync with gx86, fix FEATURES=test
-
-  26 Jun 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.9999.ebuild:
-  live ebuild update
-
-  14 Apr 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-5.0.9999.ebuild,
-  gromacs-5.0_rc1.ebuild, gromacs-9999.ebuild, metadata.xml:
-  added make-symlinks use flag, multilib-strict fix
-
-*gromacs-5.0.9999 (08 Apr 2014)
-*gromacs-5.0_rc1 (08 Apr 2014)
-
-  08 Apr 2014; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-5.0.9999.ebuild,
-  +gromacs-5.0_rc1.ebuild, -gromacs-5.0_beta1.ebuild, gromacs-9999.ebuild,
-  metadata.xml:
-  [sci-chemistry/gromacs] New ebuilds
-
-  05 Mar 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-9999.ebuild:
-  fix multilib-strict
-
-  20 Feb 2014; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  Update gromacs 5.0
-
-  16 Feb 2014; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  git-r3 too smart, migrate back to git-2
-
-  05 Feb 2014; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  Bash completion changes are comming =D
-
-  05 Feb 2014; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  Revert back to git-2 since git-r2  gives problems
-
-  25 Jan 2014; Justin Lecher <jlec@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-5.0_beta1.ebuild, gromacs-9999.ebuild:
-  Add missing dep for USE=doc
-
-  06 Jan 2014; Justin Lecher <jlec@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-5.0_beta1.ebuild, gromacs-9999.ebuild:
-  Switch from git-2 to git-r3
-
-  06 Jan 2014; Justin Lecher <jlec@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-5.0_beta1.ebuild, gromacs-9999.ebuild:
-  Switch from git-2 to git-r3
-
-  07 Dec 2013; Justin Lecher <jlec@gentoo.org> gromacs-5.0_beta1.ebuild,
-  metadata.xml:
-  Fix multilib-strict problems
-
-*gromacs-5.0_beta1 (06 Dec 2013)
-
-  06 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-5.0_beta1.ebuild,
-  gromacs-9999.ebuild:
-  Add 5.0-beta1 release
-
-  05 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  Make gromacs 9999 build manual again
-
-  05 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> -Manifest,
-  -gromacs-4.5.9999.ebuild, metadata.xml:
-  Drop 4.5
-
-  05 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  Update live ebuild to current state
-
-  03 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  make mdrun target work for gmx live
-
-  03 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  More updates #2 to gmx live
-
-  03 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  More updates to gmx live
-
-  03 Dec 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  Slightly update live ebuild for master branch
-
-  01 Jun 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  sync with gx86
-
-  05 May 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild:
-  sync with gx86
-
-*gromacs-4.5.9999 (03 May 2013)
-
-  03 May 2013; Christoph Junghans <ottxor@gentoo.org>
-  +files/gromacs-4.5.7-cmake-cpp-asm.patch, +gromacs-4.5.9999.ebuild,
-  metadata.xml:
-  added recent 4.5.x version from gx86 (bug #468454)
-
-  15 Mar 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.6.9999.ebuild:
-  nvcc flags dont needed anymore here
-
-  15 Mar 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-9999.ebuild:
-  Fix build with cuda enabled
-
-  10 Mar 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  added cuda build fix from gx86
-
-  09 Mar 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fixed deps + doc build on darwin
-
-  06 Mar 2013; Christoph Junghans <ottxor@gentoo.org> -Manifest,
-  -gromacs-4.5.9999.ebuild, gromacs-4.6.9999.ebuild, gromacs-9999.ebuild,
-  metadata.xml:
-  sync with gx86 + clean up
-
-  12 Feb 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-9999.ebuild, metadata.xml:
-  sse41 -> sse4_1 (bug #456886) + ninja has missing keywords
-
-  30 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-9999.ebuild:
-  added subslot, removed gromacs-manual blocker
-
-  30 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  clean up
-
-  28 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  added app-doc/gromacs-manual in here
-
-  21 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  sci-chemistry/gromacs: use cuda.eclass
-
-  21 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fixed sci-chemistry/gromacs[test]
-
-  21 Jan 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.6.9999.ebuild:
-  [sci-chemistry/gromacs] Drop restrict test for 4.6
-
-  21 Jan 2013; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.6.9999.ebuild:
-  [sci-chemistry/gromacs] Update 4.6 series ebuild
-
-  18 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  yet another update for git
-
-  18 Jan 2013; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  live ebuild update
-
-  30 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  further clean up
-
-  29 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fixed build with newer mkl
-
-  27 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  sci-chemistry/gromacs: clean up
-
-  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fixed openmm suffix
-
-  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fixed another typo
-
-  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fixed typo
-
-  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  metadata.xml:
-  Added mkl support
-
-  22 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-9999.ebuild, metadata.xml:
-  sync with gx86
-
-  20 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fortran is gone
-
-  08 Dec 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-4.6.9999.ebuild, gromacs-9999.ebuild:
-  CMAKE_BUILD_DIR -> BUILD_DIR
-
-  30 Nov 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  sync with gx86
-
-  27 Nov 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  metadata.xml:
-  added openmm support
-
-  19 Nov 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  live ebuild update
-
-  04 Oct 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-9999.ebuild:
-  live ebuild update
-
-  03 Oct 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  metadata.xml:
-  hybrid stuff got merged
-
-  09 Aug 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  use ninja if available
-
-  25 Jul 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-4.6.9999.ebuild, gromacs-9999.ebuild:
-  added ~x86-macos
-
-  19 Jun 2012; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.6.9999.ebuild,
-  gromacs-9999.ebuild, metadata.xml:
-  [sci-chemistry/gromacs] Add new acceleration use flags for gromacs
-
-  11 Jun 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild,
-  metadata.xml:
-  add support for new hybrid kernels
-
-  28 Apr 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  [sci-chemistry/gromacs] add more mirrors
-
-  19 Apr 2012; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-4.6.9999.ebuild, gromacs-9999.ebuild:
-  [sci-chemistry/gromacs] Also add http mirror git uri
-
-  04 Mar 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild:
-  removed obsolete call to env-update
-
-  04 Mar 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  reworked fortran and openmp support
-
-  12 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  sci-chemistry/gromacs: clean up
-
-  12 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  fixed threads and mpi
-
-  05 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  handle new vmd detection
-
-  05 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.6.9999.ebuild:
-  added openmp support
-
-*gromacs-4.6.9999 (28 Sep 2011)
-
-  28 Sep 2011; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.6.9999.ebuild:
-  Added gromacs-4.6 live version
-
-  10 Sep 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild:
-  Migrate to the bash-completion-r1 eclass
-
-  18 Jul 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild:
-  sync with tree
-
-  25 Jun 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild:
-  migrate to git-2
-
-  25 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild, metadata.xml:
-  migrate from 'git' to 'git-2'
-
-  21 Jun 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild:
-  only USE=fkernels needs fortran
-
-  21 Jun 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild:
-  Added fortran-2.eclass support
-
-  19 Jun 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  metadata.xml:
-  autotools is broken
-
-  10 Apr 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.0.9999.ebuild:
-  remove 4.0.* (EOM)
-
-  08 Mar 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.9999.ebuild,
-  gromacs-9999.ebuild:
-  added fixes from 4.5.3-r4
-
-  07 Mar 2011; Justin Lecher <jlec@gentoo.org> gromacs-4.0.9999.ebuild,
-  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
-  Correct Slots for gtk 3 introduction to tree
-
-  19 Feb 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.3-r3.ebuild:
-  InCVS
-
-*gromacs-4.5.3-r3 (17 Feb 2011)
-
-  17 Feb 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.3-r2.ebuild,
-  +gromacs-4.5.3-r3.ebuild:
-  version bump
-
-*gromacs-4.5.3-r2 (14 Feb 2011)
-
-  14 Feb 2011; Christoph Junghans <ottxor@gentoo.org> -gromacs-4.5.3-r1.ebuild,
-  +gromacs-4.5.3-r2.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
-  bring back sse/sse2 useflag (bug #339837)
-
-  20 Jan 2011; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild:
-  add back live manual
-
-  17 Jan 2011; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild:
-  QA fixes
-
-  16 Dec 2010; Justin Lecher <jlec@gentoo.org> gromacs-4.0.9999.ebuild,
-  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
-  Removal of fortran.eclass, #348851
-
-  25 Nov 2010; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.7-r5.ebuild,
-  -files/gromacs-4.0.7_missing_distfiles.patch.gz,
-  -files/gromacs-4.0.7_upstream2010-09-15.patch.gz, -gromacs-4.5.2.ebuild,
-  -gromacs-4.5.3.ebuild:
-  Moved to tree
-
-*gromacs-4.5.3 (23 Nov 2010)
-
-  23 Nov 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  +gromacs-4.5.3.ebuild:
-  version bump
-
-*gromacs-4.5.2 (30 Oct 2010)
-
-  30 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  +gromacs-4.5.2.ebuild:
-  Version bump
-
-  25 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild, metadata.xml:
-  added natural vmd support (bug #340651#c8)
-
-  21 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.5.9999.ebuild, metadata.xml:
-  added vmd use flag
-
-  17 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.7-r5.ebuild, gromacs-4.0.9999.ebuild:
-  rename manual in distfiles
-
-  16 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.9999.ebuild, gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
-  Live ebuild updates
-
-*gromacs-4.0.7-r5 (16 Oct 2010)
-
-  16 Oct 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  +gromacs-4.0.7-r5.ebuild, +files/gromacs-4.0.7_missing_distfiles.patch.gz,
-  +files/gromacs-4.0.7_upstream2010-09-15.patch.gz:
-  Version bump
-
-*gromacs-4.5.1 (02 Sep 2010)
-
-  02 Sep 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  -gromacs-4.5_beta3.ebuild, +gromacs-4.5.1.ebuild:
-  version bump
-
-*gromacs-4.5_beta3 (11 Aug 2010)
-
-  11 Aug 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.0.9999.ebuild,
-  -gromacs-4.5_beta2.ebuild, +gromacs-4.5_beta3.ebuild,
-  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
-  Add epatch_user
-
-*gromacs-4.5_beta2 (02 Aug 2010)
-
-  02 Aug 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  -gromacs-4.5_beta1.ebuild, +gromacs-4.5_beta2.ebuild,
-  gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
-  Version bump + new manual
-
-*gromacs-4.5.9999 (31 Jul 2010)
-*gromacs-4.5_beta1 (31 Jul 2010)
-
-  31 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  +gromacs-4.5_beta1.ebuild, +gromacs-4.5.9999.ebuild, gromacs-9999.ebuild:
-  Version bump
-
-  24 Jul 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild:
-  ffamber officialy shipped with gromacs from now on
-
-  08 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
-  fix for bug #301854
-
-  04 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.9999.ebuild, -files/gromacs-4.0.9999-ccache.patch,
-  -files/gromacs-4.0.9999-configure-gfortran.patch, gromacs-9999.ebuild:
-  make it compile without fortran again
-
-  04 Jul 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
-  Fixes for Bug #326331
-
-  28 Jun 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.9999.ebuild, +files/gromacs-4.0.9999-docdir.patch:
-  docdir patch is still not in 4.0 branch
-
-*gromacs-4.0.7-r3 (22 Jun 2010)
-
-  22 Jun 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  +gromacs-4.0.7-r3.ebuild, +files/gromacs-4.0.7to2010-06-08.patch.gz:
-  added patches from stable branch
-
-*gromacs-4.0.7-r2 (26 Feb 2010)
-
-  26 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.7-r2.ebuild:
-  Add ffamber port to gromacs
-
-  18 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild,
-  -files/gromacs-9999-dirent.patch:
-  Dropped unneded patches. They all were applied to git master
-
-  18 Feb 2010; Alexey Shvetsov <alexxy@gentoo.org> gromacs-9999.ebuild,
-  -files/gromacs-9999-as-needed.patch,
-  -files/gromacs-9999-install-mdrun.patch:
-  Dropped unneded patches. They all were applied to git master
-
-  09 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild,
-  +files/gromacs-9999-as-needed.patch:
-  added as-needed fix
-
-  06 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  -gromacs-4.0.7-r1.ebuild, -files/gromacs-4.0.9999-docdir.patch:
-  InCvs
-
-  06 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
-  docdir patch went upstream
-
-  01 Feb 2010; Christoph Junghans <kleiner_otti@gmx.de> gromacs-9999.ebuild,
-  +files/gromacs-9999-install-mdrun.patch:
-  update live ebuild
-
-*gromacs-4.0.7-r1 (24 Jan 2010)
-
-  24 Jan 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  -files/gromacs-4.0.4-configure-gfortran.patch, +gromacs-4.0.7-r1.ebuild,
-  gromacs-4.0.9999.ebuild, +files/gromacs-4.0.9999-ccache.patch,
-  +files/gromacs-4.0.9999-configure-gfortran.patch, gromacs-9999.ebuild:
-  Fixes bug #302048
-
-  23 Jan 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.9999.ebuild, gromacs-9999.ebuild:
-  fixed --as-needed confusion
-
-  21 Jan 2010; Christoph Junghans <kleiner_otti@gmx.de>
-  -gromacs-3.3.9999.ebuild, -gromacs-4.0.4.ebuild,
-  -files/gromacs-4.0.4-sparc-cyclecounter.patch, -gromacs-4.0.5-r1.ebuild,
-  -files/gromacs-4.0.5-docdir.patch,
-  -files/gromacs-4.0.5-path-overflow.patch, gromacs-4.0.9999.ebuild,
-  +files/gromacs-4.0.9999-docdir.patch, gromacs-9999.ebuild:
-  sync with tree and removed old ebuilds
-
-  30 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
-  files/gromacs-4.0.5-docdir.patch:
-  docdir -> htmldir
-
-  30 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.5-r1.ebuild, +files/gromacs-4.0.5-docdir.patch:
-  htmldoc was installed in the wrong path
-
-  22 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.5-r1.ebuild:
-  build mpi and non-mpi libs, enable gsl by default
-
-*gromacs-4.0.5-r1 (14 Nov 2009)
-
-  14 Nov 2009; Christoph Junghans <kleiner_otti@gmx.de>
-  +files/gromacs-4.0.4-sparc-cyclecounter.patch, +gromacs-4.0.5-r1.ebuild,
-  +files/gromacs-4.0.5-path-overflow.patch:
-  fixes bug #284431
-
-*gromacs-9999 (21 Jun 2009)
-*gromacs-4.0.9999 (21 Jun 2009)
-*gromacs-3.3.9999 (21 Jun 2009)
-
-  21 Jun 2009; Christoph Junghans <kleiner_otti@gmx.de>
-  +gromacs-3.3.9999.ebuild, +files/gromacs-4.0.4-configure-gfortran.patch,
-  +gromacs-4.0.9999.ebuild, +gromacs-9999.ebuild, metadata.xml:
-  added live ebuilds for old, stable, experimental branch
-
-  21 Jun 2009; Christoph Junghans <kleiner_otti@gmx.de>
-  gromacs-4.0.4.ebuild:
-  Fixed some repoman errors
-
-  22 Feb 2009; Jeff Gardner <je_fro@gentoo.org>
-  gromacs-4.0.4.ebuild:
-  Add 'append-ldflags' to facilitate building for users with --as-needed.
-
-*gromacs-4.0.4 (20 Feb 2009)
-
-  20 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-4.0.3-r1.ebuild,
-  +gromacs-4.0.4.ebuild:
-  Version bump\!
-
-  20 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> gromacs-4.0.3-r1.ebuild:
-  Fix typo
-
-*gromacs-4.0.3-r1 (20 Feb 2009)
-
-  20 Feb 2009; Alexey Shvetsov <alexxy@gentoo.org> +gromacs-4.0.3-r1.ebuild,
-  -gromacs-4.0.3.ebuild:
-  Add support for qm/mm with mopac7 for gromacs
-
-*gromacs-4.0.3 (20 Jan 2009)
-
-  20 Jan 2009; Alexey Shvetsov <alexxy@gentoo.org> -gromacs-3.3.3.ebuild,
-  +gromacs-4.0.3.ebuild:
-  Version bump
diff --git a/sci-chemistry/gromacs/gromacs-9999.ebuild b/sci-chemistry/gromacs/gromacs-9999.ebuild
deleted file mode 100644
index acf329d..0000000
--- a/sci-chemistry/gromacs/gromacs-9999.ebuild
+++ /dev/null
@@ -1,285 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-PYTHON_COMPAT=( python{3_2,3_3,3_4,3_5} )
-
-inherit bash-completion-r1 cmake-utils cuda eutils multilib python-single-r1 readme.gentoo-r1 toolchain-funcs
-
-if [[ $PV = *9999* ]]; then
-	EGIT_REPO_URI="git://git.gromacs.org/gromacs.git
-			https://gerrit.gromacs.org/gromacs.git
-			git://github.com/gromacs/gromacs.git
-			http://repo.or.cz/r/gromacs.git"
-	[[ $PV = 9999 ]] && EGIT_BRANCH="master" || EGIT_BRANCH="release-${PV:0:1}-${PV:2:1}"
-	inherit git-r3
-	KEYWORDS=""
-else
-	SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${PN}-${PV/_/-}.tar.gz
-		test? ( http://gerrit.gromacs.org/download/regressiontests-${PV}.tar.gz )"
-	KEYWORDS="~alpha ~amd64 ~arm ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
-fi
-
-ACCE_IUSE="cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_fma4 cpu_flags_x86_avx cpu_flags_x86_avx2"
-
-DESCRIPTION="The ultimate molecular dynamics simulation package"
-HOMEPAGE="http://www.gromacs.org/"
-
-# see COPYING for details
-# http://repo.or.cz/w/gromacs.git/blob/HEAD:/COPYING
-#        base,    vmd plugins, fftpack from numpy,  blas/lapck from netlib,        memtestG80 library,  mpi_thread lib
-LICENSE="LGPL-2.1 UoI-NCSA !mkl? ( !fftw? ( BSD ) !blas? ( BSD ) !lapack? ( BSD ) ) cuda? ( LGPL-3 ) threads? ( BSD )"
-SLOT="0/${PV}"
-IUSE="X blas boost cuda +doc -double-precision +fftw lapack mkl mpi +offensive openmp python +single-precision test +threads +tng ${ACCE_IUSE}"
-
-CDEPEND="
-	X? (
-		x11-libs/libX11
-		x11-libs/libSM
-		x11-libs/libICE
-		)
-	blas? ( virtual/blas )
-	boost? ( >=dev-libs/boost-1.55 )
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
-	fftw? ( sci-libs/fftw:3.0 )
-	lapack? ( virtual/lapack )
-	mkl? ( sci-libs/mkl )
-	mpi? ( virtual/mpi )
-	python? (
-		dev-python/numpy[${PYTHON_USEDEP}]
-		dev-python/sip[${PYTHON_USEDEP}]
-	)
-	"
-DEPEND="${CDEPEND}
-	virtual/pkgconfig
-	doc? (
-		app-doc/doxygen
-		dev-texlive/texlive-latex
-		dev-texlive/texlive-latexextra
-		media-gfx/imagemagick
-	)"
-RDEPEND="${CDEPEND}"
-
-REQUIRED_USE="
-	|| ( single-precision double-precision )
-	cuda? ( single-precision )
-	mkl? ( !blas !fftw !lapack )
-	python? ( ${PYTHON_REQUIRED_USE} )
-	"
-
-DOCS=( AUTHORS README )
-
-if [[ ${PV} != *9999 ]]; then
-	S="${WORKDIR}/${PN}-${PV/_/-}"
-fi
-
-pkg_pretend() {
-	[[ $(gcc-version) == "4.1" ]] && die "gcc 4.1 is not supported by gromacs"
-	use openmp && ! tc-has-openmp && \
-		die "Please switch to an openmp compatible compiler"
-}
-
-pkg_setup() {
-	use python && python-single-r1_pkg_setup
-}
-
-src_unpack() {
-	if [[ ${PV} != *9999 ]]; then
-		default
-	else
-		if use python; then
-			EGIT_REPO_URI="git://biod.pnpi.spb.ru/alexxy/gromacs.git"
-			EGIT_BRANCH="pygromacs_v2"
-		fi
-		git-r3_src_unpack
-		if use test; then
-			EGIT_REPO_URI="git://git.gromacs.org/regressiontests.git" \
-			EGIT_BRANCH="${EGIT_BRANCH}" \
-			EGIT_CHECKOUT_DIR="${WORKDIR}/regressiontests"\
-				git-r3_src_unpack
-		fi
-	fi
-}
-
-src_prepare() {
-	#notes/todos
-	# -on apple: there is framework support
-
-	cmake-utils_src_prepare
-
-	use cuda && cuda_src_prepare
-
-	GMX_DIRS=""
-	use single-precision && GMX_DIRS+=" float"
-	use double-precision && GMX_DIRS+=" double"
-
-	if use test; then
-		for x in ${GMX_DIRS}; do
-			mkdir -p "${WORKDIR}/${P}_${x}" || die
-			cp -al "${WORKDIR}/regressiontests"* "${WORKDIR}/${P}_${x}/tests" || die
-		done
-	fi
-
-	DOC_CONTENTS="Gromacs can use sci-chemistry/vmd to read additional file formats"
-}
-
-src_configure() {
-	local mycmakeargs_pre=( ) extra fft_opts=( )
-
-	#go from slowest to fastest acceleration
-	local acce="None"
-	use cpu_flags_x86_sse2 && acce="SSE2"
-	use cpu_flags_x86_sse4_1 && acce="SSE4.1"
-	use cpu_flags_x86_fma4 && acce="AVX_128_FMA"
-	use cpu_flags_x86_avx && acce="AVX_256"
-	use cpu_flags_x86_avx2 && acce="AVX2_256"
-
-	#to create man pages, build tree binaries are executed (bug #398437)
-	[[ ${CHOST} = *-darwin* ]] && \
-		extra+=" -DCMAKE_BUILD_WITH_INSTALL_RPATH=OFF"
-
-	if use fftw; then
-		fft_opts=( -DGMX_FFT_LIBRARY=fftw3 )
-	elif use mkl && has_version "=sci-libs/mkl-10*"; then
-		fft_opts=( -DGMX_FFT_LIBRARY=mkl
-			-DMKL_INCLUDE_DIR="${MKLROOT}/include"
-			-DMKL_LIBRARIES="$(echo /opt/intel/mkl/10.0.5.025/lib/*/libmkl.so);$(echo /opt/intel/mkl/10.0.5.025/lib/*/libiomp*.so)"
-		)
-	elif use mkl; then
-		local bits=$(get_libdir)
-		fft_opts=( -DGMX_FFT_LIBRARY=mkl
-			-DMKL_INCLUDE_DIR="$(echo /opt/intel/*/mkl/include)"
-			-DMKL_LIBRARIES="$(echo /opt/intel/*/mkl/lib/*${bits/lib}/libmkl_rt.so)"
-		)
-	else
-		fft_opts=( -DGMX_FFT_LIBRARY=fftpack )
-	fi
-
-	mycmakeargs_pre+=(
-		"${fft_opts[@]}"
-		$(cmake-utils_use X GMX_X11)
-		$(cmake-utils_use blas GMX_EXTERNAL_BLAS)
-		$(cmake-utils_use lapack GMX_EXTERNAL_LAPACK)
-		$(cmake-utils_use openmp GMX_OPENMP)
-		$(cmake-utils_use offensive GMX_COOL_QUOTES)
-		$(cmake-utils_use boost GMX_EXTERNAL_BOOST)
-		$(cmake-utils_use python GMX_PYTHON_BINDINGS)
-		$(cmake-utils_use tng GMX_USE_TNG)
-		$(cmake-utils_use doc GMX_BUILD_MANUAL)
-		-DGMX_DEFAULT_SUFFIX=off
-		-DGMX_SIMD="$acce"
-		-DGMX_LIB_INSTALL_DIR="$(get_libdir)"
-		-DGMX_VMD_PLUGIN_PATH="${EPREFIX}/usr/$(get_libdir)/vmd/plugins/*/molfile/"
-		-DGMX_X86_AVX_GCC_MASKLOAD_BUG=OFF
-		-DGMX_USE_GCC44_BUG_WORKAROUND=OFF
-		-DBUILD_TESTING=OFF
-		-DGMX_BUILD_UNITTESTS=OFF
-		${extra}
-	)
-
-	for x in ${GMX_DIRS}; do
-		einfo "Configuring for ${x} precision"
-		local suffix=""
-		#if we build single and double - double is suffixed
-		use double-precision && use single-precision && \
-			[[ ${x} = "double" ]] && suffix="_d"
-		local p
-		[[ ${x} = "double" ]] && p="-DGMX_DOUBLE=ON" || p="-DGMX_DOUBLE=OFF"
-		local cuda=( "-DGMX_GPU=OFF" )
-		[[ ${x} = "float" ]] && use cuda && \
-			cuda=( -DGMX_GPU=ON )
-		mycmakeargs=(
-			${mycmakeargs_pre[@]} ${p}
-			-DGMX_MPI=OFF
-			$(cmake-utils_use threads GMX_THREAD_MPI)
-			"${cuda[@]}"
-			-DGMX_OPENMM=OFF
-			"$(use test && echo -DREGRESSIONTEST_PATH="${WORKDIR}/${P}_${x}/tests")"
-			-DGMX_BINARY_SUFFIX="${suffix}"
-			-DGMX_LIBS_SUFFIX="${suffix}"
-			)
-		BUILD_DIR="${WORKDIR}/${P}_${x}" cmake-utils_src_configure
-		[[ ${CHOST} != *-darwin* ]] || \
-		  sed -i '/SET(CMAKE_INSTALL_NAME_DIR/s/^/#/' "${WORKDIR}/${P}_${x}/gentoo_rules.cmake" || die
-		use mpi || continue
-		einfo "Configuring for ${x} precision with mpi"
-		mycmakeargs=(
-			${mycmakeargs_pre[@]} ${p}
-			-DGMX_THREAD_MPI=OFF
-			-DGMX_MPI=ON ${cuda}
-			-DGMX_OPENMM=OFF
-			-DGMX_BUILD_MDRUN_ONLY=ON
-			-DBUILD_SHARED_LIBS=OFF
-			-DGMX_BUILD_MANUAL=OFF
-			-DGMX_BINARY_SUFFIX="_mpi${suffix}"
-			-DGMX_LIBS_SUFFIX="_mpi${suffix}"
-			)
-		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" CC="mpicc" cmake-utils_src_configure
-		[[ ${CHOST} != *-darwin* ]] || \
-		  sed -i '/SET(CMAKE_INSTALL_NAME_DIR/s/^/#/' "${WORKDIR}/${P}_${x}_mpi/gentoo_rules.cmake" || die
-	done
-}
-
-src_compile() {
-	for x in ${GMX_DIRS}; do
-		einfo "Compiling for ${x} precision"
-		BUILD_DIR="${WORKDIR}/${P}_${x}"\
-			cmake-utils_src_compile
-		# not 100% necessary for rel ebuilds as available from website
-		if use doc; then
-			BUILD_DIR="${WORKDIR}/${P}_${x}"\
-				cmake-utils_src_compile manual
-		fi
-		use mpi || continue
-		einfo "Compiling for ${x} precision with mpi"
-		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi"\
-			cmake-utils_src_compile
-	done
-}
-
-src_test() {
-	for x in ${GMX_DIRS}; do
-		BUILD_DIR="${WORKDIR}/${P}_${x}"\
-			cmake-utils_src_make check
-	done
-}
-
-src_install() {
-	for x in ${GMX_DIRS}; do
-		BUILD_DIR="${WORKDIR}/${P}_${x}" \
-			cmake-utils_src_install
-		if use doc; then
-			newdoc "${WORKDIR}/${P}_${x}"/docs/manual/gromacs.pdf "${PN}-manual-${PV}.pdf"
-		fi
-		use mpi || continue
-		BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
-			cmake-utils_src_install
-	done
-
-	if use tng; then
-		insinto /usr/include/tng
-		doins src/external/tng_io/include/tng/*h
-	fi
-	# drop unneeded stuff
-	rm "${ED}"usr/bin/GMXRC* || die
-	for x in "${ED}"usr/bin/gmx-completion-*.bash ; do
-		local n=${x##*/gmx-completion-}
-		n="${n%.bash}"
-		cat "${ED}"usr/bin/gmx-completion.bash "$x" > "${T}/${n}" || die
-		newbashcomp "${T}"/"${n}" "${n}"
-	done
-	rm "${ED}"usr/bin/gmx-completion*.bash || die
-	readme.gentoo_create_doc
-}
-
-pkg_postinst() {
-	einfo
-	einfo  "Please read and cite:"
-	einfo  "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
-	einfo  "http://dx.doi.org/10.1021/ct700301q"
-	einfo
-	readme.gentoo_print_elog
-}
diff --git a/sci-chemistry/gromacs/metadata.xml b/sci-chemistry/gromacs/metadata.xml
deleted file mode 100644
index 753027d..0000000
--- a/sci-chemistry/gromacs/metadata.xml
+++ /dev/null
@@ -1,22 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="person">
-    <email>ottxor@gentoo.org</email>
-    <name>Christoph Junghans</name>
-  </maintainer>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-  <use>
-    <flag name="cuda">Enable cuda non-bonded kernels</flag>
-    <flag name="double-precision">More precise calculations at the expense of speed</flag>
-    <flag name="single-precision">Single precision version of gromacs (default)</flag>
-    <flag name="boost">Enable external boost library</flag>
-    <flag name="tng">Enable new trajectory format - tng</flag>
-    <!-- acceleration optimization flags -->
-    <flag name="offensive">Enable gromacs partly offensive quotes</flag>
-    <flag name="mkl">Use <pkg>sci-libs/mkl</pkg> for fft, blas, lapack routines</flag>
-  </use>
-</pkgmetadata>