sci-chemistry/xyza2pipe: Version Bump

(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

4 files changed, 213 insertions, 6 deletions

diff --git a/sci-chemistry/xyza2pipe/ChangeLog b/sci-chemistry/xyza2pipe/ChangeLog
index e4ff1d0b2b58..5669aa8025fb 100644
--- a/sci-chemistry/xyza2pipe/ChangeLog
+++ b/sci-chemistry/xyza2pipe/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/xyza2pipe
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xyza2pipe/ChangeLog,v 1.1 2010/11/29 21:09:09 jlec Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xyza2pipe/ChangeLog,v 1.2 2013/11/28 07:57:06 jlec Exp $
+
+*xyza2pipe-20121001 (28 Nov 2013)
+
+  28 Nov 2013; Justin Lecher <jlec@gentoo.org> +xyza2pipe-20121001.ebuild,
+  +files/xyza2pipe-20121001-gentoo.patch, metadata.xml:
+  Version Bump
 
 *xyza2pipe-20101129 (29 Nov 2010)
 
diff --git a/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch b/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch
new file mode 100644
index 000000000000..ec4220dd0695
--- /dev/null
+++ b/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch
@@ -0,0 +1,168 @@
+ Makefile | 106 +++++++++++++++++++++++++++++++++++++--------------------------
+ 1 file changed, 63 insertions(+), 43 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 15d4bd3..e738ec2 100644
+--- a/Makefile
++++ b/Makefile
+@@ -4,7 +4,7 @@
+ #  Last modified: Feb/22/2012
+ #
+ 
+-CFLAGS		= -O3
++CFLAGS		?= -O3
+ MFLAGS		= -lm
+ 
+ TARGETS		= xyza2pipe ucsf2pipe nv2pipe xeasy2pipe azara2pipe vnmr2pipe xwnmr2pipe\
+@@ -62,89 +62,109 @@ clean:
+ 	rm -f $(TARGETS) addxyza2pipe
+ 
+ $(OBJECTS_MATH):
+-	$(CC) $*.c -c -o $@ $(CFLAGS) -D__XYZA2PIPE__
++	$(CC) $(CPPFLAGS) -D__XYZA2PIPE__ $(CFLAGS) $*.c -c -o $@
+ 
+ .o:
+-	$(CC) $< -c -o $@ $(CFLAGS)
++	$(CC) $(CPPFLAGS) $(CFLAGS) $< -c -o $@
+ 
+ xyza2pipe: $(OBJECTS_C) $(OBJECTS_XP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2xyza: $(OBJECTS_C) $(OBJECTS_PX)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ ucsf2pipe: $(OBJECTS_C) $(OBJECTS_UP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2ucsf: $(OBJECTS_C) $(OBJECTS_PU)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ nv2pipe: $(OBJECTS_C) $(OBJECTS_NP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2nv: $(OBJECTS_C) $(OBJECTS_PN)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ xeasy2pipe: $(OBJECTS_C) $(OBJECTS_EP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2xeasy: $(OBJECTS_C) $(OBJECTS_PE)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ azara2pipe: $(OBJECTS_C) $(OBJECTS_AP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2azara: $(OBJECTS_C) $(OBJECTS_PA)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ vnmr2pipe: $(OBJECTS_C) $(OBJECTS_VP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ xwnmr2pipe: $(OBJECTS_C) $(OBJECTS_BP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2proj: $(OBJECTS_C) $(OBJECTS_PJ)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ add2pipe: $(OBJECTS_C) $(OBJECTS_DXP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 	rm -f addxyza2pipe
+ 	ln -s add2pipe addxyza2pipe
+ 
+ adducsf2pipe: $(OBJECTS_C) $(OBJECTS_DUP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addnv2pipe: $(OBJECTS_C) $(OBJECTS_DNP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addxeasy2pipe: $(OBJECTS_C) $(OBJECTS_DEP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addazara2pipe: $(OBJECTS_C) $(OBJECTS_DAP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addvnmr2pipe: $(OBJECTS_C) $(OBJECTS_DVP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addxwnmr2pipe: $(OBJECTS_C) $(OBJECTS_DBP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
diff --git a/sci-chemistry/xyza2pipe/metadata.xml b/sci-chemistry/xyza2pipe/metadata.xml
index dde7ca88a50f..ae9ec7c5f6a4 100644
--- a/sci-chemistry/xyza2pipe/metadata.xml
+++ b/sci-chemistry/xyza2pipe/metadata.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
-<maintainer>
-  <email>jlec@gentoo.org</email>
-</maintainer>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
 </pkgmetadata>
diff --git a/sci-chemistry/xyza2pipe/xyza2pipe-20121001.ebuild b/sci-chemistry/xyza2pipe/xyza2pipe-20121001.ebuild
new file mode 100644
index 000000000000..bed6cadc44b2
--- /dev/null
+++ b/sci-chemistry/xyza2pipe/xyza2pipe-20121001.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xyza2pipe/xyza2pipe-20121001.ebuild,v 1.1 2013/11/28 07:57:06 jlec Exp $
+
+EAPI=5
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="Cross conversion environment of NMR spectra"
+HOMEPAGE="http://fermi.pharm.hokudai.ac.jp/olivia/api/index.php/Xyza2pipe_src"
+SRC_URI="http://fermi.pharm.hokudai.ac.jp/olivia/documents/xyza2pipe.tgz -> ${P}.tgz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="olivia"
+IUSE=""
+
+S="${WORKDIR}"/${PN}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-gentoo.patch
+	tc-export CC
+	mkdir bin
+}
+
+src_install() {
+	local i
+	dodoc README FEEDBACK
+	cd bin || die
+	for i in *; do
+		newbin ${i}{,-olivia}
+	done
+}