Moved in from sci overlay

(Portage version: 2.2_rc62/cvs/Linux x86_64)

3 files changed, 73 insertions, 0 deletions

diff --git a/sci-chemistry/pymol-plugins-cealign/ChangeLog b/sci-chemistry/pymol-plugins-cealign/ChangeLog
new file mode 100644
index 000000000000..6ca4ace0403f
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-cealign/ChangeLog
@@ -0,0 +1,13 @@
+# ChangeLog for sci-chemistry/pymol-plugins-cealign
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog,v 1.1 2010/02/18 22:00:44 jlec Exp $
+
+*pymol-plugins-cealign-0.9 (18 Feb 2010)
+
+  18 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+  +pymol-plugins-cealign-0.9.ebuild, +metadata.xml:
+  New addition, for further reading:
+  Shindyalov IN, Bourne PE. Protein structure alignment by incremental
+  combinatorial extension (CE) of the optimal path. Protein Eng. 1998
+  Sep;11(9):739-47. PMID: 9796821 [PubMed - indexed for MEDLINE]
+
diff --git a/sci-chemistry/pymol-plugins-cealign/metadata.xml b/sci-chemistry/pymol-plugins-cealign/metadata.xml
new file mode 100644
index 000000000000..c6856dc7f2cf
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+++ b/sci-chemistry/pymol-plugins-cealign/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild b/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild
new file mode 100644
index 000000000000..9dbdccab69af
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild
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+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild,v 1.1 2010/02/18 22:00:44 jlec Exp $
+
+EAPI="3"
+
+SUPPORT_PYTHON_ABIS="1"
+
+inherit distutils
+
+DESCRIPTION="The CE algorithm is a fast and accurate protein structure alignment algorithm."
+HOMEPAGE="http://www.pymolwiki.org/index.php/Cealign"
+SRC_URI="http://www.pymolwiki.org/images/0/03/Cealign-${PV}.zip"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~x86 ~amd64 ~amd64-linux"
+IUSE=""
+
+DEPEND="
+	dev-python/numpy
+	~sci-chemistry/pymol-1.2.2"
+RDEPEND=""
+RESTRICT_PYTHON_ABIS="2.4 3.*"
+
+S=${WORKDIR}/cealign-0.9
+
+src_prepare() {
+	python_copy_sources
+}
+
+src_install(){
+	mtype=$(uname -m)
+
+	distutils_src_install
+
+	installation() {
+		insinto $(python_get_sitedir)/cealign
+		doins qkabsch.py cealign.py || die
+	}
+	python_execute_function -s installation
+
+	cat >> "${T}"/pymolrc <<- EOF
+	run "${EPREFIX}/$(python_get_sitedir -f)/cealign/qkabsch.py"
+	run "${EPREFIX}/$(python_get_sitedir -f)/cealign/cealign.py"
+	EOF
+
+	insinto ${PYMOL_PATH}
+	doins "${T}"/pymolrc || die
+
+	dodoc CHANGES doc/cealign.pdf || die
+}