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author | Justin Lecher <jlec@gentoo.org> | 2010-07-19 06:43:59 +0000 |
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committer | Justin Lecher <jlec@gentoo.org> | 2010-07-19 06:43:59 +0000 |
commit | 536ef114f8332469946bd4a35dbc77dd94abbec2 (patch) | |
tree | 7994fdd1abcd304053b0e71c25b5b80a2992ab23 /sci-chemistry/clashlist | |
parent | stable x86, bug 326091 (diff) | |
download | gentoo-2-536ef114f8332469946bd4a35dbc77dd94abbec2.tar.gz gentoo-2-536ef114f8332469946bd4a35dbc77dd94abbec2.tar.bz2 gentoo-2-536ef114f8332469946bd4a35dbc77dd94abbec2.zip |
New addition
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Diffstat (limited to 'sci-chemistry/clashlist')
-rw-r--r-- | sci-chemistry/clashlist/ChangeLog | 10 | ||||
-rw-r--r-- | sci-chemistry/clashlist/clashlist-3.17.ebuild | 23 | ||||
-rw-r--r-- | sci-chemistry/clashlist/metadata.xml | 16 |
3 files changed, 49 insertions, 0 deletions
diff --git a/sci-chemistry/clashlist/ChangeLog b/sci-chemistry/clashlist/ChangeLog new file mode 100644 index 000000000000..0401d09f89a5 --- /dev/null +++ b/sci-chemistry/clashlist/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/clashlist +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/clashlist/ChangeLog,v 1.1 2010/07/19 06:43:59 jlec Exp $ + +*clashlist-3.17 (19 Jul 2010) + + 19 Jul 2010; Justin Lecher <jlec@gentoo.org> +clashlist-3.17.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/clashlist/clashlist-3.17.ebuild b/sci-chemistry/clashlist/clashlist-3.17.ebuild new file mode 100644 index 000000000000..bab469623b8e --- /dev/null +++ b/sci-chemistry/clashlist/clashlist-3.17.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/clashlist/clashlist-3.17.ebuild,v 1.1 2010/07/19 06:43:59 jlec Exp $ + +# inherit + +DESCRIPTION="Build lists of van der Waals clashes from an input PDB file" +HOMEPAGE="http://kinemage.biochem.duke.edu/software/index.php" +SRC_URI="mirror://gentoo/molprobity-${PV}.tgz" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +LICENSE="richardson" +IUSE="" + +RDEPEND=" + sci-chemistry/cluster + sci-chemistry/probe" +DEPEND="${RDEPEND}" + +src_install() { + dobin molprobity3/bin/clashlist || die +} diff --git a/sci-chemistry/clashlist/metadata.xml b/sci-chemistry/clashlist/metadata.xml new file mode 100644 index 000000000000..d02b9eb95dce --- /dev/null +++ b/sci-chemistry/clashlist/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-chemistry</herd> +<maintainer> + <email>jlec@gentoo.org</email> +</maintainer> +<longdescription> +Clashlist is a simple UNIX script which uses the awk facility along with +the programs Probe and Cluster to build lists of van der Waals clashes +from an input PDB-format molecular data file (with H atoms). These lists +are organized such that collections of interacting residues are grouped +together, sorted by the worst clash. For the purposes of this analysis, +a clash is defined as a van der Waals overlap >= 0.4 A. +</longdescription> +</pkgmetadata> |