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authorBrent Baude <ranger@gentoo.org>2005-08-09 15:52:26 +0000
committerBrent Baude <ranger@gentoo.org>2005-08-09 15:52:26 +0000
commiteaa342c5f55f24772c24bbd6359825df856bb964 (patch)
tree0aa6b09dd4fee546fe051564af7c823bda888795 /sci-biology
parentAdded to ~ppc (diff)
downloadgentoo-2-eaa342c5f55f24772c24bbd6359825df856bb964.tar.gz
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gentoo-2-eaa342c5f55f24772c24bbd6359825df856bb964.zip
Removed gzipped lop patch, re-submitting as plain text and updated ebuild with patch name
(Portage version: 2.0.51.22-r2)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/ncbi-tools/ChangeLog10
-rw-r--r--sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch15
-rw-r--r--sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch.gzbin398 -> 0 bytes
-rw-r--r--sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild4
4 files changed, 26 insertions, 3 deletions
diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog
index 2a478e5b18a7..c648fe67cc8e 100644
--- a/sci-biology/ncbi-tools/ChangeLog
+++ b/sci-biology/ncbi-tools/ChangeLog
@@ -1,6 +1,14 @@
# ChangeLog for sci-biology/ncbi-tools
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.19 2005/08/08 23:39:13 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.20 2005/08/09 15:52:26 ranger Exp $
+
+ 09 Aug 2005; Brent Baude <ranger@gentoo.org>
+ +files/ncbi-tools-20050605-lop.patch,
+ -files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild:
+ For the ebuild ncbi-tools-20050605, I was asked to remove the gz patch and
+ submit it as plain text. This commit will remove the gz patch and replace it
+ with a plain text one. The patch name change is also reflected in the
+ ebuild.
08 Aug 2005; Brent Baude <ranger@gentoo.org>
+files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild:
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch b/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch
new file mode 100644
index 000000000000..867b203aecb1
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch
@@ -0,0 +1,15 @@
+--- platform/linux-power.ncbi.mk.bak 2005-08-04 22:45:13.000000000 -0500
++++ platform/linux-power.ncbi.mk 2005-08-04 22:45:35.000000000 -0500
+@@ -9,10 +9,10 @@
+ #it appears the flags above do not work anymore with newer libc,
+ #the new flags should work. Dima. 08/23/01
+ NCBI_AR=ar
+-NCBI_CC = xlc_r -w -qcpluscmt -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
++NCBI_CC = gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
+ NCBI_CFLAGS1 = -c
+ NCBI_LDFLAGS1 = -O3 -D_LARGE_FILES
+-NCBI_OPTFLAG = -O3 -qmaxmem=-1 -D_LARGE_FILE
++NCBI_OPTFLAG = -O3 -D_LARGE_FILE
+ NCBI_BIN_MASTER = /vol/stcfs/rchen/LoP/ncbi/bin
+ NCBI_BIN_COPY = /vol/stcfs/rchen/LoP/ncbi/bin
+ NCBI_INCDIR = /vol/stcfs/rchen/LoP/ncbi/include
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch.gz b/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch.gz
deleted file mode 100644
index 24a5b531c8ee..000000000000
--- a/sci-biology/ncbi-tools/files/ncbi-tools-20050605-lop.patch.gz
+++ /dev/null
Binary files differ
diff --git a/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild
index d5a9d098809d..1eacf2f2a54a 100644
--- a/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild
+++ b/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild,v 1.2 2005/08/08 23:39:13 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20050605.ebuild,v 1.3 2005/08/09 15:52:26 ranger Exp $
inherit flag-o-matic toolchain-funcs eutils
@@ -38,7 +38,7 @@ pkg_setup() {
src_unpack() {
unpack ${A}
- use ppc64 && cd ${S} && epatch ${FILESDIR}/${P}-lop.patch.gz
+ use ppc64 && cd ${S} && epatch ${FILESDIR}/${P}-lop.patch
if ! use X; then
cd ${S}/make