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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-09-24 21:48:12 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-09-24 21:48:12 +0000 |
| commit | dc2e1099f2be0cafccc0e754caea8e52c8320e0a (patch) | |
| tree | f750b73bc595559c4c70f51f6a16e67a3fad32eb /sci-biology | |
| parent | Marked stable based on arch testing by Elijah "Armageddon" El Lazkani, TomáÅ... (diff) | |
| download | gentoo-2-dc2e1099f2be0cafccc0e754caea8e52c8320e0a.tar.gz gentoo-2-dc2e1099f2be0cafccc0e754caea8e52c8320e0a.tar.bz2 gentoo-2-dc2e1099f2be0cafccc0e754caea8e52c8320e0a.zip | |
Version bump
(Portage version: 2.2.0_alpha45/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/abyss/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/abyss/abyss-1.3.0.ebuild | 35 |
2 files changed, 41 insertions, 1 deletions
diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog index 97fbb797fcc7..0f7d4e0f7817 100644 --- a/sci-biology/abyss/ChangeLog +++ b/sci-biology/abyss/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/abyss # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.10 2011/04/28 15:01:05 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.11 2011/09/24 21:48:12 weaver Exp $ + +*abyss-1.3.0 (24 Sep 2011) + + 24 Sep 2011; Andrey Kislyuk <weaver@gentoo.org> +abyss-1.3.0.ebuild: + Version bump 28 Apr 2011; Justin Lecher <jlec@gentoo.org> abyss-1.2.3.ebuild, abyss-1.2.7.ebuild: diff --git a/sci-biology/abyss/abyss-1.3.0.ebuild b/sci-biology/abyss/abyss-1.3.0.ebuild new file mode 100644 index 000000000000..dbb174c71163 --- /dev/null +++ b/sci-biology/abyss/abyss-1.3.0.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.0.ebuild,v 1.1 2011/09/24 21:48:12 weaver Exp $ + +EAPI="4" + +inherit autotools + +DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" +SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" + +LICENSE="abyss" +SLOT="0" +IUSE="+mpi openmp" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + dev-cpp/sparsehash + mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +# todo: --enable-maxk=N configure option +# todo: fix automagic mpi toggling + +src_prepare() { + sed -i -e "s/-Werror//" configure.ac || die #365195 + sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die + eautoreconf +} + +src_configure() { + econf \ + $(use_enable openmp) +} |