diff options
author | Andrey Kislyuk <weaver@gentoo.org> | 2011-07-18 06:31:35 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-07-18 06:31:35 +0000 |
commit | 87ad9aa1d429b3192b371a9fc4f7971e4f4d69b2 (patch) | |
tree | 5a625fca980453b395af332687de91eb0fe112d8 /sci-biology | |
parent | Version bump, drop old (diff) | |
download | gentoo-2-87ad9aa1d429b3192b371a9fc4f7971e4f4d69b2.tar.gz gentoo-2-87ad9aa1d429b3192b371a9fc4f7971e4f4d69b2.tar.bz2 gentoo-2-87ad9aa1d429b3192b371a9fc4f7971e4f4d69b2.zip |
Version bump, drop old
(Portage version: 2.2_rc86/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/bioperl/ChangeLog | 10 | ||||
-rw-r--r-- | sci-biology/bioperl/bioperl-1.4.ebuild | 49 | ||||
-rw-r--r-- | sci-biology/bioperl/bioperl-1.6.9.ebuild | 68 |
3 files changed, 76 insertions, 51 deletions
diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog index 7a71184f13a8..c501c9d360ab 100644 --- a/sci-biology/bioperl/ChangeLog +++ b/sci-biology/bioperl/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/bioperl -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.47 2010/10/17 22:06:04 weaver Exp $ +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.48 2011/07/18 06:31:35 weaver Exp $ + +*bioperl-1.6.9 (18 Jul 2011) + + 18 Jul 2011; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.4.ebuild, + +bioperl-1.6.9.ebuild: + Version bump, drop old *bioperl-9999-r1 (17 Oct 2010) diff --git a/sci-biology/bioperl/bioperl-1.4.ebuild b/sci-biology/bioperl/bioperl-1.4.ebuild deleted file mode 100644 index 05a4443352c3..000000000000 --- a/sci-biology/bioperl/bioperl-1.4.ebuild +++ /dev/null @@ -1,49 +0,0 @@ -# Copyright 1999-2006 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.4.ebuild,v 1.15 2006/10/22 17:25:15 ribosome Exp $ - -inherit perl-app eutils - -DESCRIPTION="Perl tools for bioinformatics - Core modules" -HOMEPAGE="http://www.bioperl.org/" -SRC_URI="http://www.${PN}.org/ftp/DIST/${P}.tar.bz2" - -LICENSE="Artistic GPL-2" -SLOT="0" -KEYWORDS="alpha amd64 ~ia64 ~ppc ~sparc x86" -IUSE="mysql gd" - -DEPEND="virtual/perl-File-Temp - dev-perl/HTML-Parser - dev-perl/IO-String - dev-perl/IO-stringy - dev-perl/SOAP-Lite - virtual/perl-Storable - dev-perl/XML-DOM - dev-perl/XML-Parser - dev-perl/XML-Writer - dev-perl/XML-Twig - dev-perl/libxml-perl - dev-perl/libwww-perl - dev-perl/Graph - dev-perl/Text-Shellwords - gd? ( - >=dev-perl/GD-1.32-r1 - dev-perl/SVG - dev-perl/GD-SVG - ) - mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )" - -src_compile() { - yes "" | perl Makefile.PL ${myconf} \ - PREFIX="${D}"/usr INSTALLDIRS=vendor -} - -src_test() { - perl-module_src_test || die "Test failed" -} - -src_install() { - mydoc="AUTHORS BUGS FAQ" - perl-module_src_install -} diff --git a/sci-biology/bioperl/bioperl-1.6.9.ebuild b/sci-biology/bioperl/bioperl-1.6.9.ebuild new file mode 100644 index 000000000000..14990381aa04 --- /dev/null +++ b/sci-biology/bioperl/bioperl-1.6.9.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.9.ebuild,v 1.1 2011/07/18 06:31:35 weaver Exp $ + +EAPI="2" + +MY_PN=BioPerl +MODULE_AUTHOR=CJFIELDS +MODULE_VERSION=1.6.901 +inherit perl-module + +SUBPROJECTS="+db +network +run" +MIN_PV=$PV + +DESCRIPTION="Perl tools for bioinformatics - Core modules" +HOMEPAGE="http://www.bioperl.org/" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="-minimal graphviz sqlite ${SUBPROJECTS}" + +CDEPEND="dev-perl/libwww-perl + !minimal? ( + dev-perl/Algorithm-Munkres + dev-perl/Array-Compare + dev-perl/yaml + dev-perl/Clone + dev-perl/Convert-Binary-C + dev-perl/GD + dev-perl/Graph + >=dev-perl/HTML-Parser-3.60 + dev-perl/List-MoreUtils + dev-perl/Math-Random + dev-perl/PostScript + dev-perl/set-scalar + dev-perl/SOAP-Lite + dev-perl/Sort-Naturally + dev-perl/Spreadsheet-ParseExcel + >=perl-core/Storable-2.05 + >=dev-perl/SVG-2.26 + >=dev-perl/SVG-Graph-0.01 + dev-perl/URI + >=dev-perl/XML-DOM-XPath-0.13 + dev-perl/XML-Parser + >=dev-perl/XML-SAX-0.15 + dev-perl/XML-Simple + dev-perl/XML-Twig + >=dev-perl/XML-Writer-0.4 + dev-perl/XML-DOM + dev-perl/XML-XPath + ) + graphviz? ( dev-perl/GraphViz ) + sqlite? ( dev-perl/DBD-SQLite )" +DEPEND="virtual/perl-Module-Build + ${CDEPEND}" +RDEPEND="${CDEPEND}" +PDEPEND="db? ( >=sci-biology/bioperl-db-${MIN_PV} ) + network? ( >=sci-biology/bioperl-network-${MIN_PV} ) + run? ( >=sci-biology/bioperl-run-${MIN_PV} )" + +src_configure() { + if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi + perl-module_src_configure +} + +src_install() { + mydoc="AUTHORS BUGS FAQ" + perl-module_src_install +} |