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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-09-28 00:16:02 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-09-28 00:16:02 +0000 |
| commit | 1b2dab8fcc01f89e697d1b922d7d2cfe5dfd96b3 (patch) | |
| tree | 27ca97f5f0f170e6f38e2eccf05d47c06e3a99f8 /sci-biology | |
| parent | Automated update of use.local.desc (diff) | |
| download | gentoo-2-1b2dab8fcc01f89e697d1b922d7d2cfe5dfd96b3.tar.gz gentoo-2-1b2dab8fcc01f89e697d1b922d7d2cfe5dfd96b3.tar.bz2 gentoo-2-1b2dab8fcc01f89e697d1b922d7d2cfe5dfd96b3.zip | |
New package, ebuild written by me
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/diya/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/diya/diya-1.0_rc4.ebuild | 43 | ||||
| -rw-r--r-- | sci-biology/diya/metadata.xml | 9 |
3 files changed, 62 insertions, 0 deletions
diff --git a/sci-biology/diya/ChangeLog b/sci-biology/diya/ChangeLog new file mode 100644 index 000000000000..10a6db4f096d --- /dev/null +++ b/sci-biology/diya/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/diya +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/diya/ChangeLog,v 1.1 2009/09/28 00:16:02 weaver Exp $ + +*diya-1.0_rc4 (27 Sep 2009) + + 27 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +diya-1.0_rc4.ebuild: + New package, ebuild written by me + diff --git a/sci-biology/diya/diya-1.0_rc4.ebuild b/sci-biology/diya/diya-1.0_rc4.ebuild new file mode 100644 index 000000000000..044b16b4a52d --- /dev/null +++ b/sci-biology/diya/diya-1.0_rc4.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/diya/diya-1.0_rc4.ebuild,v 1.1 2009/09/28 00:16:02 weaver Exp $ + +EAPI="2" + +inherit perl-module + +DESCRIPTION="Do It Yourself Annotation, a collection of tools and libraries for sequence assembly and annotation" +HOMEPAGE="http://gmod.org/wiki/Diya" +SRC_URI="mirror://sourceforge/diyg/files/diya/diya-1.0/diya-${PV/_/-}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="-minimal" +KEYWORDS="~amd64 ~x86" + +DEPEND="sci-biology/bioperl + dev-perl/Data-Utilities + dev-perl/XML-Simple" +RDEPEND="${DEPEND} + !minimal? ( + sci-biology/mummer + sci-biology/glimmer + sci-biology/trnascan-se + sci-biology/infernal )" + +# see ftp://ftp.ncbi.nih.gov/blast/ to check if blast and blast+ are different from ncbi-tools and ncbi-tools++ +# * rfamscan.pl v0.1 (http://www.sanger.ac.uk/Users/sgj/code/) +# * UniRef50 (http://www.ebi.ac.uk/uniref/) +# * Protein Clusters (ftp://ftp.ncbi.nih.gov/genomes/Bacteria/CLUSTERS/) +# The file cddid_all.tbl can be found at ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/. + +S="${WORKDIR}/diya-${PV/_/-}" + +SRC_TEST=do + +src_install() { + mydoc="INSTALL README docs/diya.html" + perl-module_src_install + insinto /usr/share/${PN} + doins -r diya.conf docs examples scripts || die +} diff --git a/sci-biology/diya/metadata.xml b/sci-biology/diya/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/diya/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |