sci-biology/unafold: Fix test, #358053; respect CFLAGS

(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)

4 files changed, 49 insertions, 10 deletions

diff --git a/sci-biology/unafold/ChangeLog b/sci-biology/unafold/ChangeLog
index 6880d77ad5a7..ced50fec79ce 100644
--- a/sci-biology/unafold/ChangeLog
+++ b/sci-biology/unafold/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/unafold
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/unafold/ChangeLog,v 1.1 2011/01/13 19:01:49 weaver Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/unafold/ChangeLog,v 1.2 2013/02/18 11:10:31 jlec Exp $
+
+*unafold-3.8-r1 (18 Feb 2013)
+
+  18 Feb 2013; Justin Lecher <jlec@gentoo.org> unafold-3.8.ebuild,
+  +unafold-3.8-r1.ebuild, metadata.xml:
+  Fix test, #358053; respect CFLAGS
 
 *unafold-3.8 (13 Jan 2011)
 
diff --git a/sci-biology/unafold/metadata.xml b/sci-biology/unafold/metadata.xml
index 3302123e5718..fc7c76942a10 100644
--- a/sci-biology/unafold/metadata.xml
+++ b/sci-biology/unafold/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
+  <maintainer>
+    <email>weaver@gentoo.org</email>
+    <name>Andrey Kislyuk</name>
+  </maintainer>
+  <herd>sci-biology</herd>
 </pkgmetadata>
diff --git a/sci-biology/unafold/unafold-3.8-r1.ebuild b/sci-biology/unafold/unafold-3.8-r1.ebuild
new file mode 100644
index 000000000000..fafec1b89a1c
--- /dev/null
+++ b/sci-biology/unafold/unafold-3.8-r1.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/unafold/unafold-3.8-r1.ebuild,v 1.1 2013/02/18 11:10:31 jlec Exp $
+
+EAPI=5
+
+inherit flag-o-matic
+
+DESCRIPTION="Unified Nucleic Acid Folding and hybridization package"
+HOMEPAGE="http://mfold.rna.albany.edu/"
+SRC_URI="http://dinamelt.bioinfo.rpi.edu/download/${P}.tar.bz2"
+
+LICENSE="unafold"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="custom-cflags"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+	# recommended in README
+	use custom-cflags || append-flags -O3
+
+	sed \
+		-e 's:hybrid (UNAFold) 3.7:hybrid (UNAFold) 3.8:g' \
+		-i tests/hybrid.tml || die
+}
diff --git a/sci-biology/unafold/unafold-3.8.ebuild b/sci-biology/unafold/unafold-3.8.ebuild
index 72454f3c78c4..640c784ef709 100644
--- a/sci-biology/unafold/unafold-3.8.ebuild
+++ b/sci-biology/unafold/unafold-3.8.ebuild
@@ -1,8 +1,9 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/unafold/unafold-3.8.ebuild,v 1.1 2011/01/13 19:01:49 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/unafold/unafold-3.8.ebuild,v 1.2 2013/02/18 11:10:31 jlec Exp $
 
 EAPI="3"
+
 inherit flag-o-matic
 
 DESCRIPTION="Unified Nucleic Acid Folding and hybridization package"
@@ -11,8 +12,8 @@ SRC_URI="http://dinamelt.bioinfo.rpi.edu/download/${P}.tar.bz2"
 
 LICENSE="unafold"
 SLOT="0"
-IUSE=""
 KEYWORDS="~amd64 ~x86"
+IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}"
@@ -20,6 +21,10 @@ RDEPEND="${DEPEND}"
 src_prepare() {
 	# recommended in README
 	append-flags -O3
+
+	sed \
+		-e 's:hybrid (UNAFold) 3.7:hybrid (UNAFold) 3.8:g' \
+		-i tests/hybrid.tml || die
 }
 
 src_install() {