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author | Donnie Berkholz <dberkholz@gentoo.org> | 2008-04-26 06:31:30 +0000 |
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committer | Donnie Berkholz <dberkholz@gentoo.org> | 2008-04-26 06:31:30 +0000 |
commit | c670893b5884a97db7245485a3cf4fac00fd43a7 (patch) | |
tree | 7543a40eddc2e61670fbf50d0a715c766f1e78b0 /sci-biology/readseq | |
parent | Rev bump to install the dictsource directory for bug #218597. (diff) | |
download | gentoo-2-c670893b5884a97db7245485a3cf4fac00fd43a7.tar.gz gentoo-2-c670893b5884a97db7245485a3cf4fac00fd43a7.tar.bz2 gentoo-2-c670893b5884a97db7245485a3cf4fac00fd43a7.zip |
Add the Java version, which is actually maintained. This could possibly use some more enhancement to add wrappers for the GUI and such, but the ebuild is already a fully functional replacement for the old version.
(Portage version: 2.1.5_rc6)
Diffstat (limited to 'sci-biology/readseq')
-rw-r--r-- | sci-biology/readseq/ChangeLog | 12 | ||||
-rw-r--r-- | sci-biology/readseq/readseq-20080420.ebuild | 46 |
2 files changed, 56 insertions, 2 deletions
diff --git a/sci-biology/readseq/ChangeLog b/sci-biology/readseq/ChangeLog index cd592ed8308c..235794f9a61e 100644 --- a/sci-biology/readseq/ChangeLog +++ b/sci-biology/readseq/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-biology/readseq -# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/ChangeLog,v 1.5 2006/08/17 22:20:51 weeve Exp $ +# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/ChangeLog,v 1.6 2008/04/26 06:31:30 dberkholz Exp $ + +*readseq-20080420 (26 Apr 2008) + + 26 Apr 2008; Donnie Berkholz <dberkholz@gentoo.org>; + +readseq-20080420.ebuild: + Add the Java version, which is actually maintained. This could possibly + use some more enhancement to add wrappers for the GUI and such, but the + ebuild is already a fully functional replacement for the old version. 17 Aug 2006; Jason Wever <weeve@gentoo.org> readseq-19930201.ebuild: Added ~sparc keyword wrt bug #144246. diff --git a/sci-biology/readseq/readseq-20080420.ebuild b/sci-biology/readseq/readseq-20080420.ebuild new file mode 100644 index 000000000000..3897b2ffbe25 --- /dev/null +++ b/sci-biology/readseq/readseq-20080420.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/readseq-20080420.ebuild,v 1.1 2008/04/26 06:31:30 dberkholz Exp $ + +EAPI=1 + +inherit java-pkg-2 java-ant-2 + +MY_P="${PN}-source-${PV}" +DESCRIPTION="Reads and writes nucleic/protein sequences in various formats." +HOMEPAGE="http://iubio.bio.indiana.edu/soft/molbio/readseq/" +# Originally unversioned at +# http://iubio.bio.indiana.edu/soft/molbio/readseq/java/readseq-source.zip. +# Renamed to the date of the modification and mirrored +SRC_URI="http://dev.gentoo.org/~dberkholz/distfiles/${MY_P}.zip" +#SRC_URI="mirror://gentoo/${MY_P}.zip" +LICENSE="public-domain" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" +COMMON="dev-java/xerces:2 + dev-java/jaxp" +RDEPEND="${COMMON} + >=virtual/jre-1.4" +DEPEND="${COMMON} + >=virtual/jdk-1.4 + app-arch/unzip" +S=${WORKDIR} + +src_unpack() { + unpack ${A} + cd "${S}" + java-pkg_jar-from xerces-2 xercesImpl.jar lib/ibm-xml4j-min.jar + java-pkg_jar-from jaxp jaxp-ri.jar lib/orgxml.jar +} + +src_install() { + java-pkg_dojar build/readseq.jar + + java-pkg_dolauncher +} + +pkg_postinst() { + elog "Documentation is available at" + elog "http://iubio.bio.indiana.edu/soft/molbio/readseq/java/Readseq2-help.html" +} |