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| author |   Donnie Berkholz <spyderous@gentoo.org> | 2006-02-21 20:27:27 +0000 |
|---|---|---|
| committer | Donnie Berkholz <spyderous@gentoo.org> | 2006-02-21 20:27:27 +0000 |
| commit | a2848e731874cc8a47a101a8cbae060b6cac3795 (patch) | |
| tree | f74c09db7ae18260e78cfb80bd6f813e006ddf61 /sci-biology/probcons/files | |
| parent | cleaned up last v2 ebuild for fcitx (diff) | |
| download | gentoo-2-a2848e731874cc8a47a101a8cbae060b6cac3795.tar.gz gentoo-2-a2848e731874cc8a47a101a8cbae060b6cac3795.tar.bz2 gentoo-2-a2848e731874cc8a47a101a8cbae060b6cac3795.zip | |
New multiple sequence alignment package. Probably the best global aligner, although it runs slower. Takes 5-10 times longer than clustalw, but about half as long as t-coffee.
(Portage version: 2.1_pre4-r1)
Diffstat (limited to 'sci-biology/probcons/files')
| -rw-r--r-- | sci-biology/probcons/files/1.10-fix-cxxflags.patch | 21 | ||||
| -rw-r--r-- | sci-biology/probcons/files/digest-probcons-1.10 | 3 |
2 files changed, 24 insertions, 0 deletions
diff --git a/sci-biology/probcons/files/1.10-fix-cxxflags.patch b/sci-biology/probcons/files/1.10-fix-cxxflags.patch new file mode 100644 index 000000000000..bf76e77b36c1 --- /dev/null +++ b/sci-biology/probcons/files/1.10-fix-cxxflags.patch @@ -0,0 +1,21 @@ +diff -urN probcons.orig/Makefile probcons/Makefile +--- probcons.orig/Makefile 2006-02-21 12:14:37.000000000 -0800 ++++ probcons/Makefile 2006-02-21 12:15:15.000000000 -0800 +@@ -15,6 +15,8 @@ + # c) RELEASE mode + ################################################################################ + ++OPT_CXXFLAGS = -O3 -W -Wall -pedantic -funroll-loops ++ + OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.10" + + # debug mode +@@ -25,7 +27,7 @@ + + # release mode + #CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -mmmx -msse -msse2 -mfpmath=sse -march=pentium4 -mcpu=pentium4 -funroll-loops -fomit-frame-pointer +-CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -funroll-loops ++CXXFLAGS = $(OPT_CXXFLAGS) -DNDEBUG $(OTHERFLAGS) + + ################################################################################ + # 3) Dependencies diff --git a/sci-biology/probcons/files/digest-probcons-1.10 b/sci-biology/probcons/files/digest-probcons-1.10 new file mode 100644 index 000000000000..e49b2933d04c --- /dev/null +++ b/sci-biology/probcons/files/digest-probcons-1.10 @@ -0,0 +1,3 @@ +MD5 c7938b95732a85c35225bafd4b5b174f probcons_v1_10.tar.gz 43004 +RMD160 ba7caa3cadd702c3dc00c20f01bfb22416435784 probcons_v1_10.tar.gz 43004 +SHA256 f7a775ac4ba3b3261c0bbe5d2c203c96fc2551e67448aefbac83b461c931b518 probcons_v1_10.tar.gz 43004 |