diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-05-21 19:02:40 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-05-21 19:02:40 +0000 |
| commit | bb1b4152e04829d2e67416d1fd61ee80b279afde (patch) | |
| tree | fe7f02198354ca9e07c67b0cc110d13e40c0bac1 /sci-biology/gmap | |
| parent | Fix patch that failed to apply (diff) | |
| download | gentoo-2-bb1b4152e04829d2e67416d1fd61ee80b279afde.tar.gz gentoo-2-bb1b4152e04829d2e67416d1fd61ee80b279afde.tar.bz2 gentoo-2-bb1b4152e04829d2e67416d1fd61ee80b279afde.zip | |
Version bump
(Portage version: 2.2_rc86/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/gmap')
| -rw-r--r-- | sci-biology/gmap/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-biology/gmap/gmap-2011.03.28.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/gmap/metadata.xml | 3 |
3 files changed, 47 insertions, 2 deletions
diff --git a/sci-biology/gmap/ChangeLog b/sci-biology/gmap/ChangeLog index a013db986bf3..b94b229c8d6d 100644 --- a/sci-biology/gmap/ChangeLog +++ b/sci-biology/gmap/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-biology/gmap -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.8 2010/10/12 08:23:10 phajdan.jr Exp $ +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/ChangeLog,v 1.9 2011/05/21 19:02:38 weaver Exp $ + + 21 May 2011; Andrey Kislyuk <weaver@gentoo.org> +gmap-2011.03.28.ebuild: + Version bump + +*gmap-2011.03.28 (02 Apr 2011) + + 02 Apr 2011; Andrey Kislyuk <weaver@gentoo.org> +gmap-2011.03.28.ebuild: + Version bump 12 Oct 2010; Pawel Hajdan jr <phajdan.jr@gentoo.org> gmap-2010.07.27.ebuild: diff --git a/sci-biology/gmap/gmap-2011.03.28.ebuild b/sci-biology/gmap/gmap-2011.03.28.ebuild new file mode 100644 index 000000000000..76c51caa413c --- /dev/null +++ b/sci-biology/gmap/gmap-2011.03.28.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gmap/gmap-2011.03.28.ebuild,v 1.1 2011/05/21 19:02:40 weaver Exp $ + +EAPI="2" + +MY_PV=${PV//./-} + +DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences" +HOMEPAGE="http://www.gene.com/share/gmap/" +SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz" + +LICENSE="gmap" +SLOT="0" +IUSE="+samtools" +KEYWORDS="~amd64 ~x86" + +DEPEND="samtools? ( sci-biology/samtools )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/gmap-${MY_PV}.v3" + +src_configure() { + econf $(use_with samtools) +} + +src_install() { + einstall || die + dodoc AUTHORS ChangeLog README +} + +src_test() { + emake check || die +} diff --git a/sci-biology/gmap/metadata.xml b/sci-biology/gmap/metadata.xml index 3302123e5718..5ee10ffeb6d4 100644 --- a/sci-biology/gmap/metadata.xml +++ b/sci-biology/gmap/metadata.xml @@ -6,4 +6,7 @@ <name>Andrey Kislyuk</name> </maintainer> <herd>sci-biology</herd> + <use> + <flag name='samtools'>Enable support for samtools</flag> + </use> </pkgmetadata> |