Version bump, drop old

(Portage version: 2.2_rc86/cvs/Linux x86_64)

3 files changed, 50 insertions, 48 deletions

diff --git a/sci-biology/bioperl-run/ChangeLog b/sci-biology/bioperl-run/ChangeLog
index 0b7ebd7c5de7..07f848f889bc 100644
--- a/sci-biology/bioperl-run/ChangeLog
+++ b/sci-biology/bioperl-run/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/bioperl-run
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.20 2010/10/17 22:18:33 weaver Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.21 2011/07/18 06:30:59 weaver Exp $
+
+*bioperl-run-1.6.9 (18 Jul 2011)
+
+  18 Jul 2011; Andrey Kislyuk <weaver@gentoo.org> -bioperl-run-1.4.ebuild,
+  +bioperl-run-1.6.9.ebuild:
+  Version bump, drop old
 
 *bioperl-run-9999-r1 (17 Oct 2010)
 
diff --git a/sci-biology/bioperl-run/bioperl-run-1.4.ebuild b/sci-biology/bioperl-run/bioperl-run-1.4.ebuild
deleted file mode 100644
index 6285d4198e47..000000000000
--- a/sci-biology/bioperl-run/bioperl-run-1.4.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.4.ebuild,v 1.10 2006/10/22 17:38:22 ribosome Exp $
-
-inherit perl-app eutils
-
-DESCRIPTION="Perl tools for bioinformatics - Analysis run modules"
-HOMEPAGE="http://www.bioperl.org/"
-#SRC_URI="http://www.cpan.org/modules/by-module/Bio/${P}.tar.gz"
-SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.gz"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE=""
-
-RDEPEND="
-	dev-perl/Algorithm-Diff
-	virtual/perl-File-Temp
-	dev-perl/IO-String
-	dev-perl/XML-Parser
-	=sci-biology/bioperl-1.4*"
-
-DEPEND=""
-
-src_compile() {
-	perl-module_src_compile || die "compile failed"
-	# make test
-	#perl-module_src_test || die "src test failed"
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS INSTALL.PROGRAMS README"
-	perl-module_src_install
-
-	# bioperl scripts and examples
-	einfo 'Adding bioperl examples and scripts to /usr/share/...'
-	dodir /usr/share/${PF}/scripts
-	#insinto /usr/share/${PF}/scripts
-	cd "${S}"/scripts/
-	tar cf - ./ | ( cd "${D}"/usr/share/${PF}/scripts; tar xf -)
-	dodir /usr/share/${PF}/examples
-	cd "${S}"/examples/
-	tar cf - ./ | ( cd "${D}"/usr/share/${PF}/examples; tar xf -)
-	cd "${S}"
-}
diff --git a/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild b/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild
new file mode 100644
index 000000000000..03269a36d870
--- /dev/null
+++ b/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild,v 1.1 2011/07/18 06:30:59 weaver Exp $
+
+EAPI="2"
+
+BIOPERL_RELEASE=1.6.9
+
+MY_PN=BioPerl-Run
+MODULE_AUTHOR=CJFIELDS
+MODULE_VERSION=1.006900
+inherit perl-module
+
+DESCRIPTION="Perl tools for bioinformatics - Wrapper modules around key bioinformatics applications"
+HOMEPAGE="http://www.bioperl.org/"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="-minimal test"
+#SRC_TEST="do"
+
+RESTRICT="test"
+
+CDEPEND=">=sci-biology/bioperl-${BIOPERL_RELEASE}
+	!minimal? (
+		dev-perl/Algorithm-Diff
+		dev-perl/XML-Twig
+		dev-perl/IO-String
+		dev-perl/IPC-Run
+		dev-perl/File-Sort
+	)"
+DEPEND="virtual/perl-Module-Build
+	${CDEPEND}"
+RDEPEND="${CDEPEND}"
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+	# TODO: File collision in Bio/ConfigData.pm (a Module::Build internal file)
+	# with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D
+	#find "${D}" -name '*ConfigData*' -print -delete
+}