# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 PYTHON_COMPAT=( python3_{7,8} ) inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" HOMEPAGE="https://www.mcs.anl.gov/petsc/" SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" LICENSE="BSD-2" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="afterimage boost complex-scalars cxx debug fftw fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X" # hypre and superlu curretly exclude each other due to missing linking to hypre # if both are enabled REQUIRED_USE=" afterimage? ( X ) complex-scalars? ( !hypre !superlu ) hdf5? ( mpi ) hypre? ( cxx mpi !superlu ) mumps? ( mpi scotch ) scotch? ( mpi ) superlu? ( !hypre ) " RDEPEND=" virtual/blas virtual/lapack afterimage? ( media-libs/libafterimage ) boost? ( dev-libs/boost ) fftw? ( sci-libs/fftw:3.0[mpi?] ) hdf5? ( sci-libs/hdf5[mpi?] ) hypre? ( >=sci-libs/hypre-2.18.0[mpi?] ) metis? ( >=sci-libs/parmetis-4 ) mpi? ( virtual/mpi[cxx?,fortran?] ) mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) scotch? ( sci-libs/scotch[mpi?] ) sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) superlu? ( >=sci-libs/superlu-5 ) X? ( x11-libs/libX11 ) " DEPEND="${RDEPEND} ${PYTHON_DEPS} virtual/pkgconfig dev-util/cmake " PATCHES=( "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch "${FILESDIR}"/${PN}-3.13.0-fix_sandbox_violation.patch ) # petsc uses --with-blah=1 and --with-blah=0 to en/disable options petsc_enable() { use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" } # add external library: # petsc_with use_flag libname libdir # petsc_with use_flag libname include linking_libs petsc_with() { local myuse p=${2:-${1}} if use ${1}; then myuse="--with-${p}=1" if [[ $# -ge 4 ]]; then myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" shift 3 myuse="${myuse} --with-${p}-lib=$@" else myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" fi else myuse="--with-${p}=0" fi echo ${myuse} } # select between configure options depending on use flag petsc_select() { use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" } src_configure() { # bug 548498 # PETSc runs mpi processes during configure that result in a sandbox # violation by trying to open /proc/mtrr rw. This is not easy to # mitigate because it happens in libpciaccess.so called by libhwloc.so, # which is used by libmpi.so. addpredict /proc/mtrr # if mpi is built with knem support it needs /dev/knem too addpredict /dev/knem # configureMPITypes with openmpi-2* insists on accessing the scaling # governor rw. addpredict /sys/devices/system/cpu/ # bug 771711 # configureMPIEXEC and configureMPITypes access /dev/nvidiactl addpredict /dev/nvidiactl local mylang local myopt use cxx && mylang="cxx" || mylang="c" use debug && myopt="debug" || myopt="opt" # environmental variables expected by petsc during build export PETSC_DIR="${S}" export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" if use debug; then strip-flags filter-flags -O* fi # C Support on CXX builds is enabled if possible i.e. when not using # complex scalars (no complex type for both available at the same time) econf \ scrollOutput=1 \ FFLAGS="${FFLAGS} -fPIC" \ CFLAGS="${CFLAGS} -fPIC" \ CXXFLAGS="${CXXFLAGS} -fPIC" \ LDFLAGS="${LDFLAGS}" \ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ --with-shared-libraries \ --with-single-library \ --with-clanguage=${mylang} \ $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ --with-petsc-arch=${PETSC_ARCH} \ --with-precision=double \ --with-gnu-compilers \ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ $(petsc_enable debug debugging) \ $(petsc_enable mpi) \ $(petsc_select mpi cc mpicc $(tc-getCC)) \ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ $(petsc_enable fortran) \ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ $(petsc_enable mpi mpi-compilers) \ $(petsc_select complex-scalars scalar-type complex real) \ --with-windows-graphics=0 \ --with-matlab=0 \ --with-cmake:BOOL=1 \ $(petsc_enable threads pthread) \ $(petsc_with afterimage afterimage \ /usr/include/libAfterImage -lAfterImage) \ $(use_with hdf5) \ $(petsc_with hypre hypre \ /usr/include/hypre -lHYPRE) \ $(use_with sparse suitesparse) \ $(petsc_with superlu superlu \ /usr/include/superlu -lsuperlu) \ $(use_with X x) \ $(use_with X x11) \ $(petsc_with scotch ptscotch \ /usr/include/scotch \ [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ $(petsc_with mumps scalapack \ /usr/include/scalapack -lscalapack) \ $(use_with mumps mumps \ /usr/include \ [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ --with-imagemagick=0 \ --with-python=0 \ $(use_with boost) \ $(use_with fftw) } src_install() { emake DESTDIR="${ED}" install # add PETSC_DIR to environmental variables cat >> 99petsc <<- EOF PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib EOF doenvd 99petsc }