Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
path: root/sci-libs
Commit message (Collapse)AuthorAgeFilesLines
* sci-libs/NNPACK: remove ebegin eendAlfredo Tupone2022-05-181-1/+1
| | | | | | Closes: https://bugs.gentoo.org/845366 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/vtk: unrestrict hdf5Andrew Ammerlaan2022-05-181-1/+1
| | | | | | | | | | | The issue was never in vtk, it was in netcdf which has been fixed. Compiles without problems now. Bug: https://bugs.gentoo.org/833943 Closes: https://bugs.gentoo.org/834087 Closes: https://bugs.gentoo.org/809209 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/NNPACK: add to treeAlfredo Tupone2022-05-184-0/+213
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* Rename dev-cpp/{cpp-taskflow → taskflow}Matthias Maier2022-05-171-1/+1
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/nlopt: new upstream v2.7.1.Michael Orlitzky2022-05-172-0/+98
| | | | | | | | | | | * Update HOMEPAGE. * Disable MATLAB detection in src_configure(). * No more static libs. Closes: https://bugs.gentoo.org/661952 Bug: https://bugs.gentoo.org/826774 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/sundials: add 6.2.0Sam James2022-05-172-0/+120
| | | | | | | Bug: https://bugs.gentoo.org/731904 Bug: https://bugs.gentoo.org/831110 Bug: https://bugs.gentoo.org/715556 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gts: keyword 20121130 for ~loongWANG Xuerui2022-05-171-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/fftw: keyword 3.3.10 for ~loongWANG Xuerui2022-05-171-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/XNNPACK: add to treeAlfredo Tupone2022-05-174-0/+111
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/gdal: work around jpeg/png bugs in 3.5.0 for nowSam James2022-05-171-3/+3
| | | | | | | | | | | | | | | | Force on jpeg & png for now. It's not ideal but reported both upstream and I lack the gdal internals knowledge to deduce whether the various plugins which depend on each of them are functional (enough?) without each of them. They're both pretty small dependencies and hard to avoid in general, although I accept it's an inconvenience, some of this stuff was fairly expected & unavoidable with the big port to CMake. Bug: https://github.com/OSGeo/gdal/issues/5741 Bug: https://github.com/OSGeo/gdal/issues/5742 Bug: https://bugs.gentoo.org/844751 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: force JPEG support on for 3.5.0Sam James2022-05-171-3/+3
| | | | | | | | | | Upstream recommend it, the build is broken without it, and while we could fix the build issue, I don't see much point for an extremely common dependency (especially given we're the first ones to notice the build is broken w/o it). Closes: https://bugs.gentoo.org/844751 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: fix pkg-config include dir for 3.5.0Sam James2022-05-171-2/+2
| | | | | Closes: https://bugs.gentoo.org/845150 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: [QA] drop (very) stale GCC version checksSam James2022-05-172-11/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pgplot: [QA] drop (very) stale GCC version checksSam James2022-05-171-12/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: fix include directorySam James2022-05-171-0/+3
| | | | | Closes: https://bugs.gentoo.org/844874 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-164-5/+17
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/parmetis: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-161-3/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/openblas: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-163-3/+9
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/m4ri: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-161-2/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/linbox: deprecate tc-has-openmpDavid Seifert2022-05-161-2/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/kissfft: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-162-2/+10
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/coinor-csdp: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-161-4/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/vtk: correct dep on gdalAndrew Ammerlaan2022-05-151-6/+6
| | | | | | | | | | | gdal-3.5.0 now uses python-single-r1, we have to correct the dependency here to avoid a very confusing blocker Correct the dep on jpeg while we are at it, following the deprecation of the virtual Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/superlu_mt: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-151-11/+13
| | | | | | Signed-off-by: David Seifert <soap@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/25488 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hipSPARSE: egrep -> grep -ESam James2022-05-152-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocSPARSE: egrep -> grep -ESam James2022-05-152-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/sundials: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-142-10/+14
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/nfft: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-141-12/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/lis: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-141-15/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libsvm: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-143-44/+39
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/hypre: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-142-20/+14
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ginkgo: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-141-5/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ceres-solver: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-143-20/+8
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/gdal: add 3.5.0Sam James2022-05-142-0/+236
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: keyword 3.10.1 for ~loongWANG Xuerui2022-05-141-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/ta-lib: simplify for EAPI 8Sam James2022-05-131-5/+1
| | | | | | --disable-static is set by default with EAPI 8+ Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ta-lib: Fix build with slibtoolorbea2022-05-132-0/+133
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This fixes several issues with the build: * Renames configure.in to configure.ac as is standard. * Adds detection to configure.ac for libm to replaced the hardcoded instances of -lm. * Links internal dependencies with .la files rather than -l linker flags. The -l linker flags are for external dependencies exclusively and this can break with slibtool. * With slibtool there is a parellel make issue where gen_code binary is copied to ../../../bin before it is created and the Makefile.am needs to explicitly list gen_code as a prerequisite for the 'all-local' target. This probably happens because slibtool is significantly faster than GNU libtool. * Additionally slibtool will output the gen_code binary to the .libs directory while slibtool will do so in the Makefile directory. The command needs to be invoked with $(LIBTOOL) --mode=execute to correctly copy the binary and not the slibtool wrapper script for the binary. * Lastly there is a workaround for a slibtool bug where the cp(1) command is wrapped in a shell script. Invoking the command directly with --mode=execute will result in slibtool dropping the destination argument which obviously does not work. While this workaround is far from ideal, it will be portable for GNU libtool, slibtool now and slibtool when the bug is fixed. Bug: https://bugs.gentoo.org/790770 Upstream-PR: https://sourceforge.net/p/ta-lib/patches/6/ Signed-off-by: orbea <orbea@riseup.net> Closes: https://github.com/gentoo/gentoo/pull/25457 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: 2.6.0 version bumpSergey Torokhov2022-05-133-0/+205
| | | | | | | | | dev-python/pip is used to install python bindings and dev-python/pytest is used for python tests since this release Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/25357 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/openblas: keyword 0.3.20 for ~loongWANG Xuerui2022-05-131-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/openblas: run scrub-patch on openblas-0.3.20-fix-riscv.patchWANG Xuerui2022-05-131-17/+0
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/openblas: fix build on loongWANG Xuerui2022-05-132-0/+179
| | | | | Closes: https://bugs.gentoo.org/844013 Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/netcdf: ppc64 stable wrt bug #830880Agostino Sarubbo2022-05-111-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/netcdf: ppc stable wrt bug #830880Agostino Sarubbo2022-05-101-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/matio: drop 1.5.21Andrew Ammerlaan2022-05-092-47/+0
| | | | | | Bug: https://bugs.gentoo.org/842258 Bug: https://bugs.gentoo.org/803131 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/matio: add 1.5.23Andrew Ammerlaan2022-05-092-0/+47
| | | | | | Bug: https://bugs.gentoo.org/842258 Bug: https://bugs.gentoo.org/803131 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cantera: Stabilize 2.5.1-r3 amd64, #842909Jakov Smolić2022-05-091-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gsl: keyword 2.7.1-r1 for ~loongWANG Xuerui2022-05-081-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/ipopt: fix build with slibtoolØrjan Malde2022-05-071-1/+1
| | | | | | Closes: https://bugs.gentoo.org/800899 Signed-off-by: Ørjan Malde <red@foxi.me> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.4.2-r2 arm64, #842540Jakov Smolić2022-05-051-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/geos: Stabilize 3.10.2 arm, #842543Arthur Zamarin2022-05-051-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>