2021-10-03 17:51:19 UTC

3 files changed, 47 insertions, 0 deletions

diff --git a/metadata/md5-cache/sci-biology/bcftools-1.13 b/metadata/md5-cache/sci-biology/bcftools-1.13
new file mode 100644
index 000000000000..56dfbd340e2b
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/bcftools-1.13
@@ -0,0 +1,16 @@
+BDEPEND=python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] ) python_single_target_python3_10? ( dev-lang/python:3.10 >=dev-lang/python-exec-2:=[python_targets_python3_10] )
+DEFINED_PHASES=configure prepare setup
+DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.13*:= sys-libs/zlib python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] ) python_single_target_python3_10? ( dev-lang/python:3.10 >=dev-lang/python-exec-2:=[python_targets_python3_10] )
+DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files
+EAPI=8
+HOMEPAGE=http://www.htslib.org
+INHERIT=python-single-r1
+IUSE=python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10
+KEYWORDS=~amd64 ~x86
+LICENSE=MIT
+RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.13*:= sys-libs/zlib python_single_target_python3_8? ( dev-lang/python:3.8 >=dev-lang/python-exec-2:=[python_targets_python3_8] ) python_single_target_python3_9? ( dev-lang/python:3.9 >=dev-lang/python-exec-2:=[python_targets_python3_9] ) python_single_target_python3_10? ( dev-lang/python:3.10 >=dev-lang/python-exec-2:=[python_targets_python3_10] )
+REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 )
+SLOT=0
+SRC_URI=https://github.com/samtools/bcftools/releases/download/1.13/bcftools-1.13.tar.bz2
+_eclasses_=multiprocessing	61c959fc55c15c00bbb1079d6a71370b	toolchain-funcs	9ea1c67b6f8315fdc2568abb674519aa	multilib	4b66d835ec72e021e359bb81eacfe988	python-utils-r1	655fe65f186504e455c2f3116808fda8	python-single-r1	d46c125afba8be02eb1cd7104bac6e9c
+_md5_=a7d6aa14a25dfbfd5fa4547dea06070c
diff --git a/metadata/md5-cache/sci-biology/pysam-0.17.0 b/metadata/md5-cache/sci-biology/pysam-0.17.0
new file mode 100644
index 000000000000..a73d59ec35c2
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/pysam-0.17.0
@@ -0,0 +1,17 @@
+BDEPEND=test? ( =sci-biology/bcftools-1.13* =sci-biology/samtools-1.13* ) test? ( =sci-libs/htslib-1.13*:= >=dev-python/pytest-4.5.0[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+DEFINED_PHASES=compile configure install prepare test
+DEPEND==sci-libs/htslib-1.13*:= dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/setuptools[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
+EAPI=8
+HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/
+INHERIT=distutils-r1
+IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10
+KEYWORDS=~amd64 ~x86
+LICENSE=MIT
+RDEPEND==sci-libs/htslib-1.13*:= python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) python_targets_python3_10? ( dev-lang/python:3.10 ) >=dev-lang/python-exec-2:=[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
+RESTRICT=!test? ( test )
+SLOT=0
+SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.17.0.tar.gz -> pysam-0.17.0.tar.gz
+_eclasses_=multiprocessing	61c959fc55c15c00bbb1079d6a71370b	toolchain-funcs	9ea1c67b6f8315fdc2568abb674519aa	multilib	4b66d835ec72e021e359bb81eacfe988	multibuild	05a584848db4901c97fcd94ae7cc3a97	python-utils-r1	655fe65f186504e455c2f3116808fda8	python-r1	e574a3642f886323f18f867ecc4d91c4	distutils-r1	252d4f554e611b0af601160a9c7be049
+_md5_=5afaf93aeaee2506b60aa22aac9b3a2c
diff --git a/metadata/md5-cache/sci-biology/samtools-1.13 b/metadata/md5-cache/sci-biology/samtools-1.13
new file mode 100644
index 000000000000..6ffe990a6f3e
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/samtools-1.13
@@ -0,0 +1,14 @@
+BDEPEND=virtual/pkgconfig
+DEFINED_PHASES=compile configure install prepare
+DEPEND=dev-lang/perl =sci-libs/htslib-1.13*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib
+DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats
+EAPI=8
+HOMEPAGE=http://www.htslib.org/
+INHERIT=toolchain-funcs
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
+LICENSE=MIT
+RDEPEND=dev-lang/perl =sci-libs/htslib-1.13*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib
+SLOT=0
+SRC_URI=mirror://sourceforge/samtools/samtools-1.13.tar.bz2
+_eclasses_=toolchain-funcs	9ea1c67b6f8315fdc2568abb674519aa	multilib	4b66d835ec72e021e359bb81eacfe988
+_md5_=1319bb15b069d25fce506452f0b3a88f