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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild,v 1.2 2015/06/13 19:38:55 dilfridge Exp $
EAPI=5
MODULE_AUTHOR=LDS
inherit perl-module webapp
DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser"
HOMEPAGE="http://gmod.org/wiki/GBrowse"
KEYWORDS="~amd64 ~x86"
IUSE="-minimal mysql postgres +sqlite"
SLOT="0"
WEBAPP_MANUAL_SLOT="yes"
CDEPEND="!<sci-biology/GBrowse-2.44-r1
>=sci-biology/bioperl-1.6.9
>=dev-perl/Bio-Graphics-2.09
>=dev-perl/GD-2.07
>=dev-perl/CGI-Session-4.02
dev-perl/IO-String
dev-perl/JSON
dev-perl/libwww-perl
dev-perl/Statistics-Descriptive
!minimal? (
dev-perl/Bio-Das
>=dev-perl/Bio-SamTools-1.20
dev-perl/Crypt-SSLeay
dev-perl/DB_File-Lock
dev-perl/DBI
mysql? ( dev-perl/DBD-mysql )
postgres? ( dev-perl/DBD-Pg )
sqlite? ( dev-perl/DBD-SQLite )
dev-perl/FCGI
dev-perl/File-NFSLock
dev-perl/GD-SVG
dev-perl/Net-OpenID-Consumer
dev-perl/Net-SMTP-SSL
)"
# >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile
DEPEND="dev-perl/Module-Build
dev-perl/Capture-Tiny
${CDEPEND}"
RDEPEND="${CDEPEND}"
PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch )
src_configure() {
webapp_src_preinst
# myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse"
myconf="--conf=/etc/gbrowse2"
myconf="${myconf} --htdocs=${MY_HTDOCSDIR}"
myconf="${myconf} --cgibin=${MY_CGIBINDIR}"
myconf="${myconf} --tmp=/var/tmp/gbrowse2"
myconf="${myconf} --persistent=/var/db/gbrowse2"
myconf="${myconf} --databases=/var/db/gbrowse2/databases"
myconf="${myconf} --installconf=no"
myconf="${myconf} --installetc=no"
perl-module_src_configure
}
src_install() {
dodir /var/tmp/gbrowse2
dodir /var/db/gbrowse2/sessions
dodir /var/db/gbrowse2/userdata
webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2
perl-module_src_install
webapp_src_install
}
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