diff -Naur pdb2pqr-1.3.0/propka/Makefile.in pdb2pqr-1.3.0.new/propka/Makefile.in
--- pdb2pqr-1.3.0/propka/Makefile.in	2007-10-11 18:26:48.000000000 -0400
+++ pdb2pqr-1.3.0.new/propka/Makefile.in	2008-10-11 07:10:51.000000000 -0400
@@ -169,7 +169,7 @@
 	-test -z "$(noinst_PROGRAMS)" || rm -f $(noinst_PROGRAMS)
 _propkalib.so$(EXEEXT): $(_propkalib_so_OBJECTS) $(_propkalib_so_DEPENDENCIES) 
 	@rm -f _propkalib.so$(EXEEXT)
-	$(_propkalib_so_LINK) $(_propkalib_so_LDFLAGS) $(_propkalib_so_OBJECTS) $(_propkalib_so_LDADD) $(LIBS)
+	$(_propkalib_so_LINK) $(_propkalib_so_LDFLAGS) $(LDFLAGS) $(_propkalib_so_OBJECTS) $(_propkalib_so_LDADD) $(LIBS)
 propka$(EXEEXT): $(propka_OBJECTS) $(propka_DEPENDENCIES) 
 	@rm -f propka$(EXEEXT)
 	$(F77LINK) $(propka_LDFLAGS) $(propka_OBJECTS) $(propka_LDADD) $(LIBS)